Details from NCBI annotation

Gene Symbol Cdx1
Gene Name caudal type homeobox 1
Entrez Gene ID 101721517

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDX1 ENSG00000113722 (Human)

Gene Details

caudal type homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000231656, Human)

Protein Percentage 88.26%
CDS Percentage 87.5%
Ka/Ks Ratio 0.12118 (Ka = 0.0611, Ks = 0.5041)

Cdx1 ENSMUSG00000024619 (Mouse)

Gene Details

caudal type homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025521, Mouse)

Protein Percentage 87.92%
CDS Percentage 85.66%
Ka/Ks Ratio 0.10729 (Ka = 0.0653, Ks = 0.6083)

Cdx1 ENSRNOG00000018624 (Rat)

Gene Details

Homeobox protein CDX-1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000025141, Rat)

Protein Percentage 85.54%
CDS Percentage 82.64%
Ka/Ks Ratio 0.10942 (Ka = 0.0857, Ks = 0.783)

Genome Location

Sequence Coding sequence

Length: 807 bp    Location: 9479255..9494061   Strand: +
>XM_004854413.1
ATGTACGTGGGCTATGTGCTGGACAAGGACTCCCCCGTGTACCCCGGCCCGGCCAGGCCCGGGAGTCTCGGCCTGGGCCCACAAGCCTATCCCCACCCGGGCCCGGCCCCTGCTCCCCCGCAGTACCCCGACTTCACAGGCTACACTCACGTGGAGCCGGGCCCCGCGCCCCCTGCGGGCTGGGGAGTGCCCTTCCCAGCGCCCAAGGACGACTGGGCCGCCTATGGCCCCGGGCCTGCGGCCCCAGCAGCCAGCCCAGCCCCGCTGGCCTTCGGGCCCCCTCCGGACTTTAGCACGGTGCCCGCGCCCCCAGGGCCGGGCCCCGGCCTCCTGGCACAGCCCCTCGGGGGCCCAGGCGCACCGTCCTCGCCAGGAGCGCAGAGGCGGACGCCCTACGAGTGGATGCGGCGCAGCGTGGCGGCCGGAGGCGCCGGTGGCAGCGGTAAGACTCGAACCAAGGACAAGTACCGTGTGGTCTACACAGACCACCAGCGCCTGGAGCTGGAGAAGGAGTTCCATTATAGCCGGTACATCACCATCCGGAGGAAATCAGAGCTGGCTGCCAACCTGGGGCTTACTGAACGACAGGTAAAGATCTGGTTCCAAAACCGTCGAGCGAAGGAGCGCAAAGTGAACAAGAAGAAGCAACAGCAGCCGCTGCCACCCCCACAGCTACCACAGGCCCTGGACACCCTGGAAGGCACCCCCACCTCAGTGGGGCCACCCCTGGGGGGCCTGGGCCCCAGCAACACTGGCCTCCTGGGTGCTTCCTCCCCAATGCCTGTCAAGGAGGAGTTTCTGCCCTAG

Related Sequences

XP_004854470.1 Protein

Cdx1 PREDICTED: homeobox protein CDX-1 [Heterocephalus glaber]

Length: 268 aa     
>XP_004854470.1
MYVGYVLDKDSPVYPGPARPGSLGLGPQAYPHPGPAPAPPQYPDFTGYTHVEPGPAPPAGWGVPFPAPKDDWAAYGPGPAAPAASPAPLAFGPPPDFSTVPAPPGPGPGLLAQPLGGPGAPSSPGAQRRTPYEWMRRSVAAGGAGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQPLPPPQLPQALDTLEGTPTSVGPPLGGLGPSNTGLLGASSPMPVKEEFLP