Sequence details NCBI ID: XM_004854408.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Csf1r
Gene Name colony stimulating factor 1 receptor, transcript variant X3
Entrez Gene ID 101719513

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CSF1R ENSCPOG00000024309 (Guinea pig)

Gene Details

colony stimulating factor 1 receptor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014753, Guinea pig)

Protein Percentage 87.07%
CDS Percentage 88.61%
Ka/Ks Ratio 0.20385 (Ka = 0.0715, Ks = 0.3507)

CSF1R ENSG00000182578 (Human)

Gene Details

colony stimulating factor 1 receptor

External Links

Gene Match (Ensembl Protein ID: ENSP00000286301, Human)

Protein Percentage 81.06%
CDS Percentage 83.82%
Ka/Ks Ratio 0.18836 (Ka = 0.1084, Ks = 0.5755)

Csf1r ENSMUSG00000024621 (Mouse)

Gene Details

colony stimulating factor 1 receptor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110923, Mouse)

Protein Percentage 74.82%
CDS Percentage 78.42%
Ka/Ks Ratio 0.19982 (Ka = 0.1602, Ks = 0.8019)

Csf1r ENSRNOG00000018414 (Rat)

Gene Details

colony stimulating factor 1 receptor (Csf1r), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040411, Rat)

Protein Percentage 76.59%
CDS Percentage 79.53%
Ka/Ks Ratio 0.19731 (Ka = 0.1469, Ks = 0.7444)

Genome Location

Sequence Coding sequence

Length: 2943 bp    Location: 9391935..9362894   Strand: -
Raw sequence   
>XM_004854408.1
ATGGGCCCAGAGGCTCTGCTGGTCCTGCTGATGGCCACAGTTTGGCATGGTCACGGGGTTCCAGTAATAGAGCCCAGCGGCTCTGAGCTGGTCGTGCAGCCAGGTATGAAGGTGAACCTGCGATGTATGGGCAATGGCAGTGTGGAATGGGATGGCCCTATCTCCCCTTACTGGAACCTGGACCCTGACGCTCCCGGCAACAACCTGATCACCAACAATGCCACCTTCAGACACACGGGGACCTATCGCTGCACTGAGTCTGGAGACCCCCAGGGGGGCAGCGCCGTTATCCACCTCTATGTCAAAGACCCTCAGCGGCCCTGGAACCTGCTGGCAGAGGAAGTGACAGTGTTAGAGGGTCAGGATGCCCTGCTGCCCTGCCTGCTTACTGACCCTGAGCTGGAGGCTGGGGTCTCTCTGGTGCGTGTGCGTGGCCGGCCTGTCTTGCGCCAAACCAGCTACTCCTTCTCTCCCTGGTACGGTTTCACCATCCACAAGGCCAAGTACGTTGAGAGCCAGGACTACCAGTGCAGTGCTTCAGTGGACGGCAGGAAGGTGACATCCCTTGGCATCCGGCTCACTGTGAAGCAAGTCTTCCCAGGGCCCCCAACCCTGACACTGGAGCCGGCAGAGCTGGTGCGGATCCGCGGGGAGGCTGCCCAGATTGTGTGCTCAGCCAGCGATGTTGATGTCTACTTCGACGTCTTCCTCAGACATGGAGACACCAAGCTCAAAATCACTCCACGATCTGATTTCCGTGATGACCGTTACCAAAAAGTCCTGACCCTTAACCTGAATGATGTAGGCTTCCAAGATGCTGGCAACTATTCCTGCTTGGCCCAGAATGACCAGTTCGTCAACTCCAGCTCCATGATCTTCCGGGTGGTAGAGAGTCCCTACTTGAATTTGACCTCTGAGCAGGACCTCCTCCAGGAAGTAACTGTGGGTGAGAACCTCAGACTAGAAGTCAAAATGGAGGCCTACCCCAGCCTACAAGGTTACAACTGGACCTACCTGGGACCCTTCTCTGATCACGAGCACAAGTTGAATTTTAACACCATCAAGAGCACATACAGGTACTCCTCCAGCCTCTTCCTGACCCGTGTAAAGCCCTCCGAGGCTGGCCGATACTCCTTCCAGGCTTGGAACGAGGGAGGCTGGAGTGCCCTGACCTTCAACCTCACCCTGCAATACTCCCCAGAGGTCAGTGTCACATGGAACTCTATGAATGGTTCCTACACCCTGCTCTGTGTTGCCTCTGGGTACCCCCAGCCCAATGTGACTTGGCTGAAGTGCAGAGGCCACACTGACAAATGTGATAAGGCCCAGGTGCTACGTGTCTGGGAGGACTCGAACCCTGAGGTCCTGAGCCAGGAACCCTTCCACAAAGTGACTGTTCAGAGCCAGCTCACCCTCTGGACCCTGGAGCCCAATGTGACCTATGAGTGCAGGGCTTGCAACAGCATGGGGAACAGCTCCGGGATCGTTGGGCCAGTCGCTAGAGAAGCCCACACAAGGCAGCTTGAGGAGCCCTTCTTCACACCAGTGATGGCTGCCTGCATCTCCATCATGGCCTTGTTGCTGCTCTTGCTGCTACTGCTCTTGTACAAGTACAAGCAGAAGCCCAAGTATGAAGTGCGCTGGAAGATCATTGAGAGCTATGAGGGCAACAACTACATCTTCATTGACCCCACCCAGCTGCCCTACAATGAGAAGTGGGAGTTCCCCCGAAACAATCTGCAGTTTGGTAAGACCCTTGGAGCTGGCGCCTTTGGGAAGGTGGTAGAGGCCACAGCTTTTGGTCTGGGCAAAGAAGACGCTGTCCTGAAGGTGGCTGTGAAGATGCTGAAGTCCACAGCTCACGCGGATGAGAAGGAAGCCCTCATGTCAGAACTAAAAATCATGAGTCACCTGGGCCAGCATGAGAACATAGTCAACCTTCTGGGAGCCTGCACCCATGGAGGCCCTGTCCTGGTCATCACTGAGTACTGCTGCTATGGCGACCTGCTCAACTTTCTTCGAAAAAAGGCTGAGGCCATGCTGGAACCCAGCTTTCATCCAGGCCAGGACCCTGAAGGGGATACTGGCTACAAGAACATCCACCTGGAAAAGAAGGACAGTGGCTTCTCTAGCCAGGGTGTGGACACCTATGTGGAGATGAGGCCAGTGTCCACTTCCTCAAATGACTCCTTCTCTGAACAAGACCTGGATAAGGGGGACCAACAGCCACTGGAGCTCTGGGACCTACTGCACTTCTCCAGCCAGGTGGCCCAGGGCATGGCCTTCCTCGCTTCCAAGAATTGTATCCACCGGGATGTGGCCGCTCGAAATGTGCTGTTGACCAACGGGCATGTGGCCAAGATTGGGGACTTTGGGCTGGCTAGGGACATCATGAATGACTCCAACTACATCGTCAAGGGCAATGCCCGCCTGCCTGTGAAGTGGATGGCACCAGAGAGCATCTTTGACTGTGTCTACACAGTTCAGAGTGACGTCTGGTCATATGGCATCCTTCTCTGGGAGATCTTCTCACTCGGGCTGAACCCATACCCTGGCATCCTGGTGAACAGCAAGTTCTACAAACTGGTGAAAGATGGGTATCAAATGGCTCAGCCTGCCTTTGCCCCAAAGAACATATACAGCATCATGCAGGCCTGCTGGGACCTGGAGCCCACCCACAGACCCACTTTCCAGCAGATCTGCTTCCTTCTCCAGGAGCAGGTCCAAGCCGAGAGGAAAGAGCAGGACTATGCCAATCTGCCAAGCAGCAGCAGTGGCAGTGGCAACAGCAGTGGTGGCAGTGGCAACAGCAGTGGAAGCAGCAGCAGCAGCAGCAGCAACAGTGAGCCAGAGGAAGAAAGCTCCAGCGAGCACCTGGCCTGCTGTGAGGCAGGGGACATCACCCAGCCAATGCTGCAGCCCAACAACTACCAGTTCTGCTGA

Related Sequences

XP_004854465.1 Protein

Csf1r PREDICTED: macrophage colony-stimulating factor 1 receptor isoform X3 [Heterocephalus glaber]

Length: 980 aa      View alignments
>XP_004854465.1
MGPEALLVLLMATVWHGHGVPVIEPSGSELVVQPGMKVNLRCMGNGSVEWDGPISPYWNLDPDAPGNNLITNNATFRHTGTYRCTESGDPQGGSAVIHLYVKDPQRPWNLLAEEVTVLEGQDALLPCLLTDPELEAGVSLVRVRGRPVLRQTSYSFSPWYGFTIHKAKYVESQDYQCSASVDGRKVTSLGIRLTVKQVFPGPPTLTLEPAELVRIRGEAAQIVCSASDVDVYFDVFLRHGDTKLKITPRSDFRDDRYQKVLTLNLNDVGFQDAGNYSCLAQNDQFVNSSSMIFRVVESPYLNLTSEQDLLQEVTVGENLRLEVKMEAYPSLQGYNWTYLGPFSDHEHKLNFNTIKSTYRYSSSLFLTRVKPSEAGRYSFQAWNEGGWSALTFNLTLQYSPEVSVTWNSMNGSYTLLCVASGYPQPNVTWLKCRGHTDKCDKAQVLRVWEDSNPEVLSQEPFHKVTVQSQLTLWTLEPNVTYECRACNSMGNSSGIVGPVAREAHTRQLEEPFFTPVMAACISIMALLLLLLLLLLYKYKQKPKYEVRWKIIESYEGNNYIFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAEAMLEPSFHPGQDPEGDTGYKNIHLEKKDSGFSSQGVDTYVEMRPVSTSSNDSFSEQDLDKGDQQPLELWDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWDLEPTHRPTFQQICFLLQEQVQAERKEQDYANLPSSSSGSGNSSGGSGNSSGSSSSSSSNSEPEEESSSEHLACCEAGDITQPMLQPNNYQFC