Sequence details NCBI ID: XM_004854404.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pde6a
Gene Name phosphodiesterase 6A, cGMP-specific, rod, alpha
Entrez Gene ID 101718823

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDE6A ENSCPOG00000001962 (Guinea pig)

Gene Details

phosphodiesterase 6A, cGMP-specific, rod, alpha

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001770, Guinea pig)

Protein Percentage 94.88%
CDS Percentage 93.57%
Ka/Ks Ratio 0.13204 (Ka = 0.0268, Ks = 0.2032)

PDE6A ENSG00000132915 (Human)

Gene Details

phosphodiesterase 6A, cGMP-specific, rod, alpha

External Links

Gene Match (Ensembl Protein ID: ENSP00000255266, Human)

Protein Percentage 94.3%
CDS Percentage 90.89%
Ka/Ks Ratio 0.07459 (Ka = 0.0283, Ks = 0.3795)

Pde6a ENSMUSG00000024575 (Mouse)

Gene Details

phosphodiesterase 6A, cGMP-specific, rod, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025468, Mouse)

Protein Percentage 93.95%
CDS Percentage 87.25%
Ka/Ks Ratio 0.03905 (Ka = 0.029, Ks = 0.7431)

Pde6a ENSRNOG00000017816 (Rat)

Gene Details

phosphodiesterase 6A, cGMP-specific, rod, alpha (Pde6a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024171, Rat)

Protein Percentage 93.6%
CDS Percentage 87.44%
Ka/Ks Ratio 0.04431 (Ka = 0.0304, Ks = 0.6868)

Genome Location

Sequence Coding sequence

Length: 2583 bp    Location: 9248537..9182865   Strand: -
Raw sequence   
>XM_004854404.1
ATGGGTGAGGTGACAGCAGAGGAAGTAGAAAAGTTTCTGGACTCAAATATTGGCTTTGCCAAAGAGTACTACAATCTCCACTACCGGGCCAAGGTTATCTCAGACCTTCTTGGAGCCAAGGAGGCAGCTGTGGACTTTAGCAACTACCACTCACTGAGCAGTGTGGAAGAGAGTGAAATCATCTTTGATCTCCTACGGGACTTCCAGGAGAATTTACAGACAGAGAAGTGCATCTTCAATGTCATGAAGAAGCTGTGCTTCCTCCTGCAGGCAGACCGCATGAGCTTGTTCATGTACAGGACCCGCAATGGTGTCGCAGAGCTAGCTACACGCCTCTTCAATGTCCACAAAGATGCTGTCCTTGAAGACTGCCTGGTGATGCCTGACTCAGAGATTGTCTTCCCTCTGGACATGGGTGTCGTGGGACGTGTTGCACACTCTAAAAAGCTTGCCAATGTCCCCAACACAGAAGAGGATGAGCATTTTTGTGACTTTGTGGACAGCCTCACAGAGTACCAGACAAAGAACATCTTGGCTACTCCCATAATGAATGGGAAAGACATAGTGGCCATAATCATGGCTGTGAATAAAGTAGAGGGATCCCACTTCACCACGACAGATGAAGAGATTCTTCTCAAGTACCTCAATTTTGCAAATCTAATCATGAAGGTGTTCCACCTGAGTTACCTTCACAACTGTGAGACTCGACGTGGCCAGATCCTGCTGTGGTCTGGCAGCAAAGTCTTTGAAGAGCTTACGGATATTCAGAGACAGTTCCATAAAGTCCTGTACACAGTCCGTGCCTTCCTCAACTGTGACAGATATTCCGTGGGTCTCCTAGATATGTCTAAGCAGAAGGAATTTTTTGATGTGTGGCCAGTTCTGATGGGTGAGGCTCCACCCTACTCTGGTCCCAGAACTCCAGATGGAAGGGAAATTAACTTTTACAAAGTCATTGACTACATCCTGCATGGCAAAGAAGACATCAAAGTAATCCCGAATCCACCTCCTGACCACTGGGCTTTAGTAAGTGGTCTCCCTACCTTCGTTGCCCAAAATGGCCTGATTTGCAATATCATGAACGCACCTGCGGAGGACTTTTTTGCATTTCAGAAAGAGCCACTGGATGAGTCTGGATGGATGATTAAAAATGTCCTTTCAATGCCAATTGTGAACAAGAAGGAAGAAATTGTTGGGGTGGCCACGTTTTACAATCGCAAAGATGGGAAGCCCTTTGATGAAATGGATGAGACCCTCATGGAGTCTTTGACTCAATTCCTGGGATGGTCTGTCTTAAATCCTGACACCTATGAATCCATGAACAAATTGGAAAATAGGAAAGATATTTTCCAGGACATTGTGAAATATCATGTGAAGTGTGATAATGATGAAATTCAGAAAATCCTGAAAACCAGAGAGGTGTATGGGAAGGAGCCATGGGAATGTGAGGAAGAGGAGCTGGCTGAGATTCTGCAAGGGGAGCTACCAGATACAGAGAAATATGAAATTAATAAATTCCACTTCAGTGACTTGCCCCTCACAGAACTTGAGCTGGTGAAATGTGGGATACAGATGTATTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCACAAGAGGCTCTGGTGCGGTTCATGTACTCCCTGAGCAAAGGCTACCGCAGGATCACCTACCACAACTGGCGGCATGGCTTCAACGTGGGCCAGACCATGTTCTCCTTGCTGGTGACGGGAAAGCTAAAGCAATACTTCACTGACCTAGAGGCCTTGGCCATGGTCACTGCTGCCTTCTGTCATGACATTGACCACAGAGGCACCAACAACCTCTACCAGATGAAATCCCAGAACCCACTGGCTAAGCTCCATGGTTCCTCCATCTTGGAAAGACACCACTTGGAGTTTGGCAAAACACTGCTGAGAGATGAGAGCCTGAATATCTTTCAAAACCTCAGTCGCAGGCAGCATGAGCATGTAATCCACATGATGGACATTGCAATCATTGCCACTGACCTTGCTCTCTATTTCAAGAAGAGGACAATGTTCCAAAAGATTGTGGATCAGTCGAAGACATATGAGAATGCACAAGAGTGGACACAGTACATGAGGCTGGAGCAGACAAGGAAGGAAATCGTTATGGCCATGATGATGACTGCTTGTGATCTCTCGGCCATCACCAAACCCTGGGAGGTGCAGAGCAAGGTGGCTCTGCTGGTGGCAGCTGAATTCTGGGAGCAGGGTGACTTGGAGCGCACGGTGCTGCAACAGAATCCTATTCCCATGATGGACAGAAACAAGGCAGATGAACTCCCGAAGCTGCAAGTTGGTTTCATTGACTTTGTCTGCACCTTTGTCTATAAGGAGTTCTCCCGTTTCCATGAGGAGATAACCCCCATGCTGGATGGGATCACCAACAATCGCAAGGAATGGAAGGCCCTTGCTGACGAATATGACACCAAGATGAAGACGCTGGAGGAGGAGAAACAGAAGCAGCTAACAGCCAAGCAAGCATCCTCAGGAAACCAGCCTGAGGGCGTCCCCAACCCAGGCAGTGCGCCTACATCCAAGTCCTGCTGCATCCAGTAG

Related Sequences

XP_004854461.1 Protein

Pde6a PREDICTED: rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha [Heterocephalus glaber]

Length: 860 aa      View alignments
>XP_004854461.1
MGEVTAEEVEKFLDSNIGFAKEYYNLHYRAKVISDLLGAKEAAVDFSNYHSLSSVEESEIIFDLLRDFQENLQTEKCIFNVMKKLCFLLQADRMSLFMYRTRNGVAELATRLFNVHKDAVLEDCLVMPDSEIVFPLDMGVVGRVAHSKKLANVPNTEEDEHFCDFVDSLTEYQTKNILATPIMNGKDIVAIIMAVNKVEGSHFTTTDEEILLKYLNFANLIMKVFHLSYLHNCETRRGQILLWSGSKVFEELTDIQRQFHKVLYTVRAFLNCDRYSVGLLDMSKQKEFFDVWPVLMGEAPPYSGPRTPDGREINFYKVIDYILHGKEDIKVIPNPPPDHWALVSGLPTFVAQNGLICNIMNAPAEDFFAFQKEPLDESGWMIKNVLSMPIVNKKEEIVGVATFYNRKDGKPFDEMDETLMESLTQFLGWSVLNPDTYESMNKLENRKDIFQDIVKYHVKCDNDEIQKILKTREVYGKEPWECEEEELAEILQGELPDTEKYEINKFHFSDLPLTELELVKCGIQMYYELKVVDKFHIPQEALVRFMYSLSKGYRRITYHNWRHGFNVGQTMFSLLVTGKLKQYFTDLEALAMVTAAFCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKTLLRDESLNIFQNLSRRQHEHVIHMMDIAIIATDLALYFKKRTMFQKIVDQSKTYENAQEWTQYMRLEQTRKEIVMAMMMTACDLSAITKPWEVQSKVALLVAAEFWEQGDLERTVLQQNPIPMMDRNKADELPKLQVGFIDFVCTFVYKEFSRFHEEITPMLDGITNNRKEWKALADEYDTKMKTLEEEKQKQLTAKQASSGNQPEGVPNPGSAPTSKSCCIQ