Sequence details NCBI ID: XM_004854401.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ppargc1b
Gene Name peroxisome proliferator-activated receptor gamma, coactivator 1 beta, transcript variant X2
Entrez Gene ID 101717446

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PPARGC1B ENSCPOG00000001958 (Guinea pig)

Gene Details

peroxisome proliferator-activated receptor gamma, coactivator 1 beta

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001766, Guinea pig)

Protein Percentage 85.25%
CDS Percentage 88.4%
Ka/Ks Ratio 0.26347 (Ka = 0.0796, Ks = 0.3022)

PPARGC1B ENSG00000155846 (Human)

Gene Details

peroxisome proliferator-activated receptor gamma, coactivator 1 beta

External Links

Gene Match (Ensembl Protein ID: ENSP00000312649, Human)

Protein Percentage 79.86%
CDS Percentage 83.66%
Ka/Ks Ratio 0.25604 (Ka = 0.1197, Ks = 0.4674)

Ppargc1b ENSMUSG00000033871 (Mouse)

Gene Details

peroxisome proliferative activated receptor, gamma, coactivator 1 beta

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000074771, Mouse)

Protein Percentage 76.35%
CDS Percentage 79.96%
Ka/Ks Ratio 0.20501 (Ka = 0.14, Ks = 0.6828)

Ppargc1b ENSRNOG00000017503 (Rat)

Gene Details

peroxisome proliferator-activated receptor gamma, coactivator 1 beta (Ppargc1b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023661, Rat)

Protein Percentage 75.15%
CDS Percentage 79.49%
Ka/Ks Ratio 0.22203 (Ka = 0.1483, Ks = 0.6679)

Genome Location

Sequence Coding sequence

Length: 3030 bp    Location: 9125825..9171758   Strand: +
Raw sequence   
>XM_004854401.1
ATGGGTCGAAGCTGTGCAGAAAGACCTCTACTGGACCACCATTGCCAACAGGGTGGGGGATCCGGGCAGGAGCAACTCTGTGCCGACTTTCCCGAGCTCGACCTCTCCCAGCTGGACACCAGCGACTTTGATTCAGCCACCTGCTTCGGGGAGCTGCAGTGGTGCCCGGAGAACTCTGAAACCGAGCCCAGCCAGTACAGCCCCGACGACTGCGAGCTCTTTCAGATTGACAGTGAGAATGAGGCCCTCCTGGCGGCCCTCACCAAGACCCTGGACGACATCCCCGAGGATGATGTGGGGCTGGCCGCCTTCTCGGCCCTGGATGAAGGAGACACACCATCCTGCACGTCAGCCTCACCTGCACCCTTGTCTGCGCCGCCCAGCCCTGCCCCAGAACCCGTGGCCCCAGCCTCAGAGGTGGATGAGCTTTCCCTGCTGCAGAAGCTCCTCCTGGCCACATCCTCCCCACCGTCAAGCTCTGACACTCAGAAGGAGGGGACCACTTGGCGCCAGGCTGGCCTCAGGCCCAGAAGTCAACGGCCATGGGTCAAGATGGACAGCGCCCAGGACAAGAAGGCCCCCATGTCACAGTCTCAGAGCCGGAGTTGTACAGAACTACATAAGCACCTCACTTCGGTGCCATCATGTCCCCAGGCAAAAGCCTGTTCTCCAGAGAGGGGCCTGCAACGGCCACTGCCCCTGAGTCCCCAGCTTCTTGCCAAGGAGGACTATGCGAGCACTCAGCCAGCTCCAGCCTCTCACCTGGATGCTGTGACACTGGGAAGGGCAAGCCCCTGTCCCCAGGTTCCCCAGGAGGACGTGCAGGCAATGGTGCAGCTCATCCGCTACATGCACACCTACTGCCTCCCCCAGAGGAAGCTGCCCCCACAGCCCCCTGAGCCGGCTCCCCAGCCCCAAGGCAGCCCCTCCAGGCAGGTCCGGCCCCAGCCCCGGCCCCCCTCCAAAGCCTCCTGGGCTGAGTTCTCCATCCTGAGGGAACTTCTGGCTCAAGATGTCCTCTGTGATGTCAGCAAACCCTACCGCCTGGCCACACCTGTCTATGCCTCTCTTACACCCCAGTCAAGGCCAAGGCTCCCCAAAGACAGCCAGGCCTCCCCTGCTCACCCAGCCCCAATGGAGGAGGTGAGGATCACAGCTTCACCCAGGAGCTCAGGGCCCCGGCCGAGCCTGCGTCCACTTCGGCTGCAGGTGAAAGGTGTTGTCAGCCGGTCTGCCAGGCTAAAGCAGCAGGCGGAAGATGAGGAGGAGGAAGAAGAGGAGGACGACGAAGAAGAGGAAGAAGAGGAGGAGGAGTGGGGAAGGAAAAGGCCAGCCCGAGGTCTGCCATGGACCAAGCTAGGGAAGAAGCTGGAAAGCTCTATGTGCCCTGTGCGACGTTCTCGGAGACTGAACCCTGAACTGGGCCCCTGGCTGACATTCTCTGATGAGTTGCTGGCCCCCTCAGAGCCCCAAGGTGCTCTGCCCTCACTGCACCTGGCTCCTAAGACCTGGAACATGGAGGGACAGCTGGGCAGCCCCACGGATGAGGACAGTGTCCAAGACCAGCAGCTCCTACGGGGACCCCAGATCCCTGCCCTGGAGAGTCCCTGCGAGAGTGGGTGTGGGGACACGGATGAGGACCCCAGCTGCCCACAGCTCCCTTCCAGAGACTCTTCAAGGTGCCTCATGCTGGCCTTGTCACAAAGCAACCCTCCTTTTGGGAAGAAGAGCTTTGAGCAGACCCTCACAGTGGAGCTCTGTGGCACGGCAGGACTCACACCCCCTACCACACCTCCCTATAAGCCCACAGAGGAGGATCCCTTCAAGCCAGACATCAAGCACAGCCTGAGCCAAGAGACAGCTCCCAGCCCCCACTCCCGTGGGGCCCTCCAGCTCACGGCTGCCCCAGGAGCTTCCCCGAAGCTGCCTAAGAAGCTCTCAGAACAGAGTGAGCTCCTGTCCCACCTTCGACATGTCCCAACTCAGCCTGCCTCCCAGGCTGGCCAGAAGCGCCCCTTCTCCTGTTCCTTTGGAGACCATGACTACTGCCAGGTGCTCAGGCCAGAGGGGGCCCTGCAGAGGAAGGTGCTGAGGTCCTGGAAGCCATCTGGGGTCCACCTTGAGGACTGGCCCCAGCAAGATGCCCCCTCACGGGCAGAGACTCAGGTCCCTAGGAAGGAAAAGGACCGAAGCTGTGATGTCTGCATGCCACCCAAGGACAATGTGCAGCTGAGAGACCACGAGATCCGCGCCAGCCTCACCAAGCACTTTGGGCTGCTGGAGACTGCCCTGGAGGACGAAGACCTGGCCTCGTGCAAGAGCCCTGAATATGATGTCTTTGAGGACAGCAGCAGCAGCAGTGGTGAGAGCAGCTTCCTCCTGGAGGAAGAGGAAGAGAGGGAGGAGGAGGAGGACAATGATGGAGAGGACTTGGGGGTCAGCCCTCCTTGCTCTGACCACTGCCCCTACCAGAGCCCGCCCAGCAGGGCCAATCAGCAGCTCTGTCCCTGCAGCCACTCCAGCTCTGGCTCCTCATCCTGCCGCTCCTGGTCACCAGCCACCCAAAGGAACTTCAGATGTGAAAGCAGAGGGCCATGTGCAGATGGAACCCCAAGTTTCCGGCGCGCCAGGAAGCGGCAGGAAAAGGCCATTGGTGAAGGCCGCGTCGTGTATGTTCGAAATCTCTCCAGCTACATGAGCTCCCGAGAGCTAAAGAAGCGCTTTGAGGTGTTTGGCGAGATCGTAGAATGCCAGGTGCTGACAAGAAGTAAGAGAGGCGAGAAGCATGGCTTCATCACCTACCGGTGTTCTGAGCATGCGGCCCTGTCCCTGCAGAATGGCACTGCCCTGAGGAAGCGCAACGAGCCCTCCTTCCAGCTGAGTTCGGGCAGGCTCCGGCACTTCCACTGGCCCCAACACTCTGACTACGATGGCAATCCAGAGGAGGCCCTTCCTGCATCTGGGAAAAGCAAGTACGAAGCCATGGATTTTGACAGCTTGCTGAAAGAGGCCCAGCAGAGCCTACATTGA

Related Sequences

XP_004854458.1 Protein

Ppargc1b PREDICTED: peroxisome proliferator-activated receptor gamma coactivator 1-beta isoform X2 [Heterocephalus glaber]

Length: 1009 aa      View alignments
>XP_004854458.1
MGRSCAERPLLDHHCQQGGGSGQEQLCADFPELDLSQLDTSDFDSATCFGELQWCPENSETEPSQYSPDDCELFQIDSENEALLAALTKTLDDIPEDDVGLAAFSALDEGDTPSCTSASPAPLSAPPSPAPEPVAPASEVDELSLLQKLLLATSSPPSSSDTQKEGTTWRQAGLRPRSQRPWVKMDSAQDKKAPMSQSQSRSCTELHKHLTSVPSCPQAKACSPERGLQRPLPLSPQLLAKEDYASTQPAPASHLDAVTLGRASPCPQVPQEDVQAMVQLIRYMHTYCLPQRKLPPQPPEPAPQPQGSPSRQVRPQPRPPSKASWAEFSILRELLAQDVLCDVSKPYRLATPVYASLTPQSRPRLPKDSQASPAHPAPMEEVRITASPRSSGPRPSLRPLRLQVKGVVSRSARLKQQAEDEEEEEEEDDEEEEEEEEEWGRKRPARGLPWTKLGKKLESSMCPVRRSRRLNPELGPWLTFSDELLAPSEPQGALPSLHLAPKTWNMEGQLGSPTDEDSVQDQQLLRGPQIPALESPCESGCGDTDEDPSCPQLPSRDSSRCLMLALSQSNPPFGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSLSQETAPSPHSRGALQLTAAPGASPKLPKKLSEQSELLSHLRHVPTQPASQAGQKRPFSCSFGDHDYCQVLRPEGALQRKVLRSWKPSGVHLEDWPQQDAPSRAETQVPRKEKDRSCDVCMPPKDNVQLRDHEIRASLTKHFGLLETALEDEDLASCKSPEYDVFEDSSSSSGESSFLLEEEEEREEEEDNDGEDLGVSPPCSDHCPYQSPPSRANQQLCPCSHSSSGSSSCRSWSPATQRNFRCESRGPCADGTPSFRRARKRQEKAIGEGRVVYVRNLSSYMSSRELKKRFEVFGEIVECQVLTRSKRGEKHGFITYRCSEHAALSLQNGTALRKRNEPSFQLSSGRLRHFHWPQHSDYDGNPEEALPASGKSKYEAMDFDSLLKEAQQSLH