Sequence details NCBI ID: XM_004854223.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cntn4
Gene Name contactin 4, transcript variant X2
Entrez Gene ID 101700570

Database interlinks

Part of NW_004624773.1 (Scaffold)

For more information consult the page for NW_004624773.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CNTN4 ENSCPOG00000026863 (Guinea pig)

Gene Details

contactin 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020074, Guinea pig)

Protein Percentage 97.85%
CDS Percentage 95.48%
Ka/Ks Ratio 0.06252 (Ka = 0.0101, Ks = 0.1611)

CNTN4 ENSG00000144619 (Human)

Gene Details

contactin 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000380602, Human)

Protein Percentage 96.98%
CDS Percentage 92.33%
Ka/Ks Ratio 0.0471 (Ka = 0.0147, Ks = 0.3119)

Cntn4 ENSMUSG00000064293 (Mouse)

Gene Details

contactin 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000108889, Mouse)

Protein Percentage 95.71%
CDS Percentage 90.32%
Ka/Ks Ratio 0.05089 (Ka = 0.0211, Ks = 0.4145)

Cntn4 ENSRNOG00000005652 (Rat)

Gene Details

contactin 4 (Cntn4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007788, Rat)

Protein Percentage 95.22%
CDS Percentage 89.86%
Ka/Ks Ratio 0.0542 (Ka = 0.0234, Ks = 0.4324)

Genome Location

Sequence Coding sequence

Length: 3081 bp    Location: 12543337..13300487   Strand: +
Raw sequence   
>XM_004854223.1
ATGAGGTTGCCATGGGAACTGCTGGTACTGCAATCATTCATGTTGTGCCTTGCAGATGACTACACACTACATGGCCCAGTTTTTATTCAAGAACCAAATCATGTAATGTTCTCTTTGGATTCTGAGGAGAAAAAAGTGAAGCTCAGTTGTGAAGTCAAGGGGAATCCAGAACCTCACATCAGGTGGAAGTTAAATGGAACAGATGTTGACATTGGAATGGATTTCCGCTACAGTGTTGTTGAAGGCAGCTTATTGATCAATAACCCCAATAAAACCCAAGATACTGGAACTTACCAGTGCATAGCAACAAACTCATTCGGAACAATTGTTAGCAGAGAAGCAAAGCTTCAGTTCGCTTACCTTGAAAACTTTAAAACCAGGACGAGAAGCACGGTGTCTGTCCGTCGAGGTCAGGGAATGGTACTCCTCTGTGGCCCACCACCCCACTCTGGAGAGCTGAGCTACGCCTGGATCTTCAATGAGTATCCTTCCTATCAAGATAATCGCCGCTTTGTTTCTCAAGAAACTGGGAATCTGTACATTGCCAAAGTAGAAAAATCAGATGTTGGGAACTATACTTGCGTGGTTACTAATACTGTAACAAACCACAAGGTCCTGGGGCCCCCTACACCACTAATACTGAGAAATGATGGGGTGATGGGCGAATATGAACCAAAAATAGAAGTGCAGTTTCCAGAAACAGTCCCTACTGCCAAAGGAGCAACGGTCAAGCTGGAGTGCTTTGCTTTAGGAAACCCAGTACCAACTATTGCCTGGAGAAGAGCTGACGGAAAGCCCATAGCAAGGAAAGCCAGAAGGCACAAGTCAAATGGAATTCTTGAAATACCCAATTTTCAGCAGGAAGATGCTGGCTTATATGAATGTGTGGCTGAAAATTCTAGAGGAAAAAATGTAGCAAGGGGACAGTTGACTTTTTATGCTCAACCTAATTGGATTCAAAAAATAAATGATATTCATGTGGCCATGGAAGAAAAAGTCTTTTGGGAATGTAAAGCAAATGGGAGGCCCAAACCTACATACAAGTGGCTAAAAAATGGTGAACCACTGTTAACTCGGGATAGAATTCAAATCGAGCAAGGAACACTCAACATAACAATAGTGAATCTCTCGGATGCAGGCATGTATCAGTGTGTGGCAGAGAATAAACATGGAGTTATCTTTTCCAGCGCAGAGCTTAGTGTAATAGCTGCAGGTCCAGATTTCTCAAGAACTCTCTTGAAAAGATTAACTCTTGTCAAAGTGGGAGGTGAAGTTGTTATTGAGTGTAAACCAAAAGCTTCTCCAAAACCTGTCTACACCTGGAAGAAAGGAAGGGACCTATTAAGAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGGATCATCAATGTGACTAAATCAGATGCCGGAAGCTATACCTGTATAGCCACTAACCATTTTGGAACTGCCAGCAGTACTGGAAACTTAGTCGTGAAAGATCCAACAAGGGTAATGGTTCCTCCTTCCAGTATGGATGTCACTGTCGGAGAAAGCATTGTTCTGCCATGTCAGGTGACACATGATCACTCGTTAGACATTGTGTTTACATGGTCATTTAATGAACATCTGATAGACTTTGACAAGGATGGGGACCACTTCGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAACTGAAGCATGCTGGGAAATACATCTGCATGGTCCAGACAAGTGTGGACAGATTATCTGCTGCTGCAGACCTGATTGTAAGAGGTCCGCCAGGTCCCCCAGAAGCTGTGACCATTGATGAAATCACAGACACCACTGCTCAGCTTTCCTGGAGACCTGGGCCTGACAACCATAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCATTCTCCGTGGGCTGGCAAGCAGTCAGTACAGTCCCAGAACTCATTGATGGAAAGACATTCACAGCAACAGTGGTGGGTTTGAACCCTTGGGTTGAATATGAATTCCGCACTGTTGCAGCCAATGTGATTGGCATTGGGGAGCCCAGCCGACCCTCAGAGAAACGGAGGACAGAAGAAGCCCTCCCCGAAGTCACTCCAGCTAACGTCAGTGGTGGTGGAGGCAGCAAATCTGAACTGGTTATAACCTGGGAGACGGTCCCCGAAGAATTACAGAATGGTAGGGGCTTTGGTTATGTGGTAGCCTTCCGACCATATGGCAAAATGATATGGATGTTGACAGTGCTGGCCTCAGCCGACGCCTCCAGATATGTGTTCAGAAATGAGAGTGTACGCCCCTTTTCTCCCTTTGAGGTTAAAGTTGGCGTCTTCAACAACAAAGGAGAAGGCCCTTTCAGTCCCACCACAGTGGTGTATTCTGCTGAAGAAGAACCTGCTAAACCACCAGCTAGCATCTTTGCAAGAAGTCTTTCTGCCACAGATATCGAGGTTTTCTGGGCCTCCCCACTAGGGAAGAATAGAGGACGGATACAAGGTTATGAGGTTAAATATTGGAGACATGATGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTGGGAAATCAGACATCAACAAAAATCACCAATTTACAAGGCAGTGCACTGTATCACTTAGCAGTCAAGGCATATAATTCAGCTGGGACAGGCCCCTCCAGTGTAACGGTCAATGTCACAACTAGAAAGCCACCACCAAGCCAACCCCCCGGAAACATCATATGGAATTCATCGGACTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCAGAAGTAAAAGGATACAAAGTCTTGTATAGATGGAACAGACAGAGCAGCACATCTGTCATTGAAACAAATAAAACATCAGTGGAGCTTTCTTTACCTTTTGATGAAGATTATATAATTGAAATCAAGCCATTCAGTGATGGAGGAGATGGCAGCAGCAGTGAACAAATTCGAATTCCAAAGATATCAAATTCCTACGCAAGAGGATCCGGAGCTTCTACATCGAATGCATGTACCTTGTCAGCCATCAGCACAATAATGATTTCCCTCACAGCCAGGTCTAGTTTATGA

Related Sequences

XP_004854280.1 Protein

Cntn4 PREDICTED: contactin-4 isoform X2 [Heterocephalus glaber]

Length: 1026 aa      View alignments
>XP_004854280.1
MRLPWELLVLQSFMLCLADDYTLHGPVFIQEPNHVMFSLDSEEKKVKLSCEVKGNPEPHIRWKLNGTDVDIGMDFRYSVVEGSLLINNPNKTQDTGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPTAKGATVKLECFALGNPVPTIAWRRADGKPIARKARRHKSNGILEIPNFQQEDAGLYECVAENSRGKNVARGQLTFYAQPNWIQKINDIHVAMEEKVFWECKANGRPKPTYKWLKNGEPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAAGPDFSRTLLKRLTLVKVGGEVVIECKPKASPKPVYTWKKGRDLLRENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVVKDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNEHLIDFDKDGDHFERVGGQDSAGDLMIRNIQLKHAGKYICMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVSTVPELIDGKTFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLASADASRYVFRNESVRPFSPFEVKVGVFNNKGEGPFSPTTVVYSAEEEPAKPPASIFARSLSATDIEVFWASPLGKNRGRIQGYEVKYWRHDDKEENARKIRTVGNQTSTKITNLQGSALYHLAVKAYNSAGTGPSSVTVNVTTRKPPPSQPPGNIIWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSVIETNKTSVELSLPFDEDYIIEIKPFSDGGDGSSSEQIRIPKISNSYARGSGASTSNACTLSAISTIMISLTARSSL