Sequence details NCBI ID: XM_004854220.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cntn6
Gene Name contactin 6, transcript variant X2
Entrez Gene ID 101699235

Database interlinks

Part of NW_004624773.1 (Scaffold)

For more information consult the page for NW_004624773.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CNTN6 ENSCPOG00000001124 (Guinea pig)

Gene Details

contactin 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001016, Guinea pig)

Protein Percentage 92.85%
CDS Percentage 92.39%
Ka/Ks Ratio 0.15541 (Ka = 0.0366, Ks = 0.2357)

CNTN6 ENSG00000134115 (Human)

Gene Details

contactin 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000407822, Human)

Protein Percentage 90.95%
CDS Percentage 90.43%
Ka/Ks Ratio 0.14892 (Ka = 0.0464, Ks = 0.3113)

Cntn6 ENSMUSG00000030092 (Mouse)

Gene Details

contactin 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000086623, Mouse)

Protein Percentage 89.01%
CDS Percentage 86.67%
Ka/Ks Ratio 0.0979 (Ka = 0.0543, Ks = 0.5548)

Cntn6 ENSRNOG00000032517 (Rat)

Gene Details

contactin 6 (Cntn6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047690, Rat)

Protein Percentage 88.12%
CDS Percentage 85.78%
Ka/Ks Ratio 0.10411 (Ka = 0.0605, Ks = 0.5813)

Genome Location

Sequence Coding sequence

Length: 3090 bp    Location: 11059744..11417733   Strand: +
Raw sequence   
>XM_004854220.1
ATGAGGTTGCTATGGAAACTGGTAATTCTGCTGCCACTCATAAACTCTTGTGCAGGAGAAGGCTGGTGGAGCCGACCTATTTTTACCCAGGAGCCACAAGATGTCATTTTTCCTTTGGATTTATCACGATCTGAAATCATCCTGAATTGTGCTGCTAATGGTTACCCTTCACCCCATTATAGGTGGAAGCAAAATGGTTCCGAGATTGATTTTACCAGGAATTATCGCTACAAGCTGGATGGAGGCAGATTGGCCATTAGTAGCCCACGCACAGGTGAAGATATTGGCACATACCAGTGCCTGGCCACCAATCTCTTGGGTACAATTCTGAGTCGGAAGGCGAAACTCCAGTTTGCATATATTGAAGACTTTGAAACCAAAACAAGAAGCACAGTGTCTGTTCGAGAAGGTCAAGGCGTAGTGCTTCTCTGTGGGCCACCACCACATTTTGGAGATTTATCTTATGCATGGACCTTCAATGATAACCCTCTTTATGTCCAAGAAGACAACAGGCGGTTTGTATCTCAAGAGACAGGAAACTTGTACATCGCCAAAGTAGAACCATCAGATGTAGGCAACTACACTTGCTTTGTAACAAACAAGGAGGCCCAAAGAAGTGTTCAAGGTCCACCCACTCCTTTAGTGCAGCGCACTGATGGTGTGATGGGGGAATATGAACCAAAGATTGAAGTGCGTTTTCCTGAAACTATACAAGCTGCAAAGGATTCATCTGTAAAACTGGAATGCTTTGCCCTTGGCAATCCAGTACCTGATATTAGTTGGAGAAGGTTGGATGGAAGCCCATTGCCAAGGAAAATCAAGTACAGCAAATCCCAAGCTATCCTTGAAATCCCGAACTTTCAACAGGAGGATGAAGGCTTCTATGAGTGCCTTGCAGGAAACCTTCGAGGAAGAAACCTTGCAAAGGGTCAACTCATTTTCTATGCCCCTCCAGAGTGGGAACACAAAATCCAAAATACATATCTCTCTATCTATGACAATTTGTATTGGGAATGCAAAGCTAGTGGAAAACCAAATCCTTGGTACACATGGCTAAAAAATGGTGAACGCCTCAACTCAGAGGAGAGAATTCAAATAGAAAATGGGACACTCACCATAACGATACTGAATGTGTCAGATTCTGGTGTCTACCAATGTGCTGCAGAAAACAAATATCAGATAATTTATGCTAATGCAGAATTGAGAGTATTAGCCTCTGCTCCGGATTTCTCCAAAAGTCCTATCAAAAAAATTTCTATTGTTCAAATTGGTGGGGATATTTCTATTGAATGTAAACCAAATGCTTTTCCCAGAGCAGCTATCTCATGGAAAAGAGGATCAGAGAGCCTGAGACAAAGTAAAAGAGTATTTCTCTTGGAGGATGGAAGCCTCAAGATACATAATGTTACCAGATCAGATGCTGGGCCATATACATGTATAGCAACAAATCAGTTTGGCATTGCAAAGAACACTGGCAGTCTCATCGTAAAAGAGAGGACTATTATTACTGTCCCACCTTCTAAAATGGATGTCACAGTTGGTGAGAGTATTGTCCTACCTTGCCAAGTGTCCCATGACCCCTCCATTGAAGTTGTATTTGCATGGTCTTTCAATGGAAATATCATAGACTTACAAAAACAAGTGGCTCATTTTGAAAAGATTGGAGGAGAATCTGTTGGGGATTTGATGATAAGGAATATTCAGTTAAGTCATTCAGGAAAATATCTCTGCACAGTACGAACAACTCTAGAACGTTTATCTGCTGTTGCTGACATCATTGTTAGAGGTCCCCCAGGTCCCCCAGAGGATGTGAGAGTGGAGCACATTTCCAGCACTACCTCTCAGATAAGCTGGAGACCAGGCCCTGACAATAACAGTCCCATTCAGATATTTACTGTGCAGACTCGGACACCGTTTTCTGTGGGTTGGCAAGCTGTTGCGACAGTCCCAGAAATTCTCAATGGTCAGACATACAATGCAACAGTGGTTGGTTTGAGTTCTTGGGTGGAGTATGAATTTCGTGTTGTTGCCGGTAACAGCATTGGGATTGGAGAACCAAGTAAACCATCAAAACTGTTAAGAACTAAAGCATCAGTTCCTGTCCTGGCACCGGTAAACATCAATGGAGGTGGAGGAGGTCGATATGAGCTCGTCATTACGTGGGAGTCAATTCCAGAAGAACTACAGAATGGAGAAGGATTTGGATATATCGTCATGTTCCGGCCCGTTGGTTCTACAGCTTGGACCAAGGAAAGAGTACCACTTGTAGAATCATCAAAGTTTGTTTACAGAAATGAAAGCATCATGCCTCTCTCTCCCTTTGAAGTCAAAGTAGGTGTATACAATAATGAAGGAGAAGGACCCCTGAGTACCGTGTCCATTGTCTACTCTGGAGAAGATGAACCTCAGTTGGCCCCAAGAGGAACATCTTTGCAGAGTTTCTCTGCTTCTGAAATGGAAGTTTCTTGGAATGCTATTGCCTGGAATAGAAACACTGGAAGAGTGTTGGGCTATGAGGTATTATACTGGACTGATGACTCCAAGGAATCCATAATTGGTAAAATTAGAGTCAGTGGAAATGTTACAAACAAAAGCATCACAGGGCTGAAAGCTAATACAGTTTACTTTGCTTCTGTGAGAGCTTACAACACTGCTGGAACAGGGCCCTCAAGCCTCCCAGTCAATGTCACCACCAAAAAGTCTCCTCCAAGCCAACCACCAGCAAACATTGCCTGGAAGCTGTCAAACTCTAAATTGTGCTTGAACTGGGAGCATGTAAAAACTATGGAAAATGAGTCTGAGGTTTTGGGCTACAAGATTCTGTATCGGCAAAACAGACAGAGTAAAACTCATATTTTGGAAACAAATAATACATCAGCTGAACTGCTGGTTCCATTTGAAGAAGACTACTTGATTGAAATAAGAACTGTCAGTGATGGTGGAGATGGAAGCAGCAGTGAGGAGATTAGGATTCCAAAAATGTCAAGTTTGAGTTCAAGAGGAATTCACATCTTAGAACCTACTGCCCATTTCCTGCCAGTTGTTGTTGTGACTTTTTACTGTTTTGCTATTGATCCACTTATAAGATGA

Related Sequences

XP_004854277.1 Protein

Cntn6 PREDICTED: contactin-6 isoform X2 [Heterocephalus glaber]

Length: 1029 aa      View alignments
>XP_004854277.1
MRLLWKLVILLPLINSCAGEGWWSRPIFTQEPQDVIFPLDLSRSEIILNCAANGYPSPHYRWKQNGSEIDFTRNYRYKLDGGRLAISSPRTGEDIGTYQCLATNLLGTILSRKAKLQFAYIEDFETKTRSTVSVREGQGVVLLCGPPPHFGDLSYAWTFNDNPLYVQEDNRRFVSQETGNLYIAKVEPSDVGNYTCFVTNKEAQRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPLPRKIKYSKSQAILEIPNFQQEDEGFYECLAGNLRGRNLAKGQLIFYAPPEWEHKIQNTYLSIYDNLYWECKASGKPNPWYTWLKNGERLNSEERIQIENGTLTITILNVSDSGVYQCAAENKYQIIYANAELRVLASAPDFSKSPIKKISIVQIGGDISIECKPNAFPRAAISWKRGSESLRQSKRVFLLEDGSLKIHNVTRSDAGPYTCIATNQFGIAKNTGSLIVKERTIITVPPSKMDVTVGESIVLPCQVSHDPSIEVVFAWSFNGNIIDLQKQVAHFEKIGGESVGDLMIRNIQLSHSGKYLCTVRTTLERLSAVADIIVRGPPGPPEDVRVEHISSTTSQISWRPGPDNNSPIQIFTVQTRTPFSVGWQAVATVPEILNGQTYNATVVGLSSWVEYEFRVVAGNSIGIGEPSKPSKLLRTKASVPVLAPVNINGGGGGRYELVITWESIPEELQNGEGFGYIVMFRPVGSTAWTKERVPLVESSKFVYRNESIMPLSPFEVKVGVYNNEGEGPLSTVSIVYSGEDEPQLAPRGTSLQSFSASEMEVSWNAIAWNRNTGRVLGYEVLYWTDDSKESIIGKIRVSGNVTNKSITGLKANTVYFASVRAYNTAGTGPSSLPVNVTTKKSPPSQPPANIAWKLSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSKTHILETNNTSAELLVPFEEDYLIEIRTVSDGGDGSSSEEIRIPKMSSLSSRGIHILEPTAHFLPVVVVTFYCFAIDPLIR