Sequence details NCBI ID: XM_004854144.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Chst13
Gene Name carbohydrate (chondroitin 4) sulfotransferase 13, transcript variant X3
Entrez Gene ID 101703999

Database interlinks

Part of NW_004624773.1 (Scaffold)

For more information consult the page for NW_004624773.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CHST13 ENSCPOG00000015174 (Guinea pig)

Gene Details

carbohydrate (chondroitin 4) sulfotransferase 13

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013680, Guinea pig)

Protein Percentage 90.32%
CDS Percentage 89.44%
Ka/Ks Ratio 0.11966 (Ka = 0.0495, Ks = 0.414)

CHST13 ENSG00000180767 (Human)

Gene Details

carbohydrate (chondroitin 4) sulfotransferase 13

External Links

Gene Match (Ensembl Protein ID: ENSP00000317404, Human)

Protein Percentage 82.65%
CDS Percentage 82.06%
Ka/Ks Ratio 0.06518 (Ka = 0.0926, Ks = 1.42)

Chst13 ENSMUSG00000056643 (Mouse)

Gene Details

carbohydrate (chondroitin 4) sulfotransferase 13

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000064897, Mouse)

Protein Percentage 79.7%
CDS Percentage 78.61%
Ka/Ks Ratio 0.09969 (Ka = 0.1185, Ks = 1.189)

Chst13 ENSRNOG00000025930 (Rat)

Gene Details

carbohydrate (chondroitin 4) sulfotransferase 13 (Chst13), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000037933, Rat)

Protein Percentage 79.35%
CDS Percentage 78.37%
Ka/Ks Ratio 0.09389 (Ka = 0.1226, Ks = 1.3052)

Genome Location

Sequence Coding sequence

Length: 1026 bp    Location: 68367..39858   Strand: -
Raw sequence   
>XM_004854144.1
ATGGGGAGGCGGTGCTGCTGGCGGCGGCGCGGGTTGGTGACCGCGTGTCTAGGCGCCGCGTTCCTGCTCCTGTGCACTGCGCCCCGCGCCCTCCGCCTGGCATTTGAAAACAGGTCCCTGGGCTCCATCTGGCTCAGTGGGGAGAGGAGGAGTCCCCTACAGGTGCTCTATGACCTGGACCAGAGTCTGAGCTCACCCCTGGCAGAGGTGCACCGGCAGCGGCGCGACCTCCTGCGCCAAACCTGCAGCCGCCTCACGCGTCGGCAGCACCTGCTACGGCCAGAGGACCTGCGGCATGTGCTGGTGGACGATGCGCACGGCCTGCTTTACTGCTACGTGCCCAAGGTAGCCTGCACCAACTGGAAGCGCGTTCTGCTAGCGCTGAGCGGCCGGGCCCGCAGCGATCCCCGCACCATCCCCGCGCGCCAGGCTCATGCGCCAGGCAGCCTGCCCTCGCTGGCAGACTTTACCCCAGCGGAAATCAACAAGCGTCTGCGCTCCTATTTGACCTTTCTATTTGTGCGCGAGCCTTTCGAGCGCCTGGCGTCTGCCTACCGAAACAAGTTCGCCAGGCCCTACAGCGAGGCCTTCCAGCGGCGCTATGGCACGCGCATAGTGCGGCGCCTGCGCCCCCGCGCAAACCCTGACGCCCTGGCACGCGGCCACGACGTACGCTTTGCAGAATTCCTGGGCTACCTGCTGGATCCGCGCACACGGCGCGACGAGCCCTTTAATGAGCACTGGGAACGAGCACATGCTCTCTGCCATCCATGCCGCTTGCGCTATGACGTCGTGGGCAAGTTCGAAACGCTGACAGAGGATGCTTCCTTCGTCCTGGACTTGGTGGGCGAGCCAGACCTGCGTTTTCCGATGCCGCCACGCCCCAAAGGGGCTGCTCCCAGAGACCAAGCTGCACGCCTCTTCCAGGACATCAGCCCCTTCTACCAGCGGCGCCTCTTTGACCTCTACAAGATGGACTTCCTGCTCTTCAATTACTCAACCCCCTCCTACCTGCGGCTGCGTTAG

Related Sequences

XP_004854201.1 Protein

Chst13 PREDICTED: carbohydrate sulfotransferase 13 isoform X3 [Heterocephalus glaber]

Length: 341 aa      View alignments
>XP_004854201.1
MGRRCCWRRRGLVTACLGAAFLLLCTAPRALRLAFENRSLGSIWLSGERRSPLQVLYDLDQSLSSPLAEVHRQRRDLLRQTCSRLTRRQHLLRPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGRARSDPRTIPARQAHAPGSLPSLADFTPAEINKRLRSYLTFLFVREPFERLASAYRNKFARPYSEAFQRRYGTRIVRRLRPRANPDALARGHDVRFAEFLGYLLDPRTRRDEPFNEHWERAHALCHPCRLRYDVVGKFETLTEDASFVLDLVGEPDLRFPMPPRPKGAAPRDQAARLFQDISPFYQRRLFDLYKMDFLLFNYSTPSYLRLR