Details from NCBI annotation

Gene Symbol Csde1
Gene Name cold shock domain containing E1, RNA-binding
Entrez Gene ID 101717101

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CSDE1 ENSG00000009307 (Human)

Gene Details

cold shock domain containing E1, RNA-binding

External Links

Gene Match (Ensembl Protein ID: ENSP00000407724, Human)

Protein Percentage 92.85%
CDS Percentage 90.7%
Ka/Ks Ratio 0.19231 (Ka = 0.0546, Ks = 0.2837)

Csde1 ENSMUSG00000068823 (Mouse)

Gene Details

cold shock domain containing E1, RNA binding

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029446, Mouse)

Protein Percentage 92.43%
CDS Percentage 89.24%
Ka/Ks Ratio 0.16035 (Ka = 0.0579, Ks = 0.3613)

Csde1 ENSRNOG00000030302 (Rat)

Gene Details

cold shock domain containing E1, RNA binding (Csde1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000051275, Rat)

Protein Percentage 92.56%
CDS Percentage 89.28%
Ka/Ks Ratio 0.15777 (Ka = 0.0572, Ks = 0.3626)

Genome Location

Sequence Coding sequence

Length: 2568 bp    Location: 10406663..10369447   Strand: -
>XM_004854122.1
ATGACTGAAGGAGCAGTTACCTCGGAAGGACATTTGAAGCTATTTGAAATGGAGAACACATTTACTCTGTCATCAGCGCCTCATCCCCCTCCTGCAGCCCCTCCTTCACTTTCCTTACCTTTATCTTCATCTTCTACCTCATCTGGGACTAAAAAACAAAAGAGGACCCCCACGTATCAGAGATCTATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAGCAGCGCTTCGTGAAACTGGGGTTATTGAAAAACTGTTAACCTCTTATGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTTTTCTTCCACTGTTCACAATACAATGGCAACCTGCAGGACTTAAAAGTAGGAGATGATGTTGAATTCGAAGTTTCATCTGACCGGCGGACTGGCAAACCAATTGCTATTAAACTAGTGAAGATAAAACCAGAAATCCACCCTGAAGAACGAATGAATGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCCAGCTGCCCCCGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGAAGTGTTTTACCTGACTTACACCCCTGAAGATGTTGAAGGGAATGTTCAGCTGGAAACCGGAGATAAAATAAATTTTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAACATTATGCTGTTGAAAAAGAAACAAGCCCGCTGTCAGGGGGTAGTTTGTGCCATGAAGGAGGCATTTGGCTTTATTGAAAGAGGCGATGTGGTAAAAGAGATATTCTTCCACTACAGTGAGTTTAAAGGTGACCTGGAAACCTTGCAACCTGGAGATGATGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGATTATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAGGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCACTGCCAGGACGAATCAAGGTTGATTTTGTGATTCCTAAAGAACTTCCTTTTGGAGATAAAGATACAAAATCCAAGGTGACCCTGCTGGAAGGTGACCATGTTAGATTTAATATTTCAACAGACCGACGTGACAAATTAGAACGAGCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAAATGGGTGTAATCGCTGCCATGAGAGATGGGTTTGGTTTCATCAAGTGTGTGGATCGGGATGCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTTCATATTGCAGATGAAGTAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACAGTTTCATTCCATTCTCATTCAGATCATCGTTTTCTGGGCACTGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCTAACAAAGCCAAGGAGAAGGAAGCTGAGGATGGCATTATTGCTTATGATGATTGTGGAGTGAAACTGACTATTGCTTTTCAAGCCAAGGATGTGGAAGGTTCTACTTCTCCTCAGATAGGAGATAAGGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGGCAGCAAGTTGCAACCTGTGTGCGACTTTTAGGTCGTAATTCCAATTCCAAGAGGCTCTTGGGTTATGTGGCAACTCTGAAAGATAATTTTGGATTTATTGAAACAGCCAATCATGATAAGGAGCTGGTATTCCACCACTCACAGCTCAGTGGTGATGTTGATAGCCTGGAACTGGGGGACATGGTTGAGTACAGCTTGTCCAAAGGCAAAGGCAACAAAGTCAGCGCTGAAAAAGTAAACAAAACTCACTCAGTGAATGGTATTACTGAGGAAGCTGATCCTACCATCTACTCTGGTAAAGTCATTCGTCCTCTGAGGAGTGTTGATCCAACACAGACTGAGTATCAAGGAATGATTGAGATTGTGGAAGAGGGTAAGTACCTCCCTGATGGTTGGAAATTTACCGTACCTACTGATGAGCATTTTGAAGGTTTTAAAATACAGAGTTCATCAAGCACAAGGACCCAAAGTAAGGTATTTTTGCTTCTTCTAGAATGTCCTCTTTTTTTAGCTACTATTTGTTTGTTTTCATTTCAGTTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCTACAGGCAGGAGACGAGGTGGAGTTCTCAGTGATTCTTAACCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTTTGGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGCCCCTCGACCTGATCGGTTGGTCAATCGCTTGAAGAACATCACTGTGGATGATGCCAGTGCTCCTCGCTTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAA

Related Sequences

XP_004854179.1 Protein

Csde1 PREDICTED: cold shock domain-containing protein E1 [Heterocephalus glaber]

Length: 855 aa     
>XP_004854179.1
MTEGAVTSEGHLKLFEMENTFTLSSAPHPPPAAPPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAIKLVKIKPEIHPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKAKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKELVFHHSQLSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGKYLPDGWKFTVPTDEHFEGFKIQSSSSTRTQSKVFLLLLECPLFLATICLFSFQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITVDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID