Sequence details NCBI ID: XM_004854066.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psmb4
Gene Name proteasome (prosome, macropain) subunit, beta type, 4, transcript variant X1
Entrez Gene ID 101720684

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSMB4 ENSCPOG00000015209 (Guinea pig)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013710, Guinea pig)

Protein Percentage 94.68%
CDS Percentage 92.4%
Ka/Ks Ratio 0.10158 (Ka = 0.0255, Ks = 0.251)

PSMB4 ENSG00000159377 (Human)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000290541, Human)

Protein Percentage 92.4%
CDS Percentage 90.49%
Ka/Ks Ratio 0.12416 (Ka = 0.0388, Ks = 0.3125)

Psmb4 ENSMUSG00000005779 (Mouse)

Gene Details

proteasome (prosome, macropain) subunit, beta type 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000005923, Mouse)

Protein Percentage 92.4%
CDS Percentage 88.21%
Ka/Ks Ratio 0.09638 (Ka = 0.0425, Ks = 0.4408)

Psmb4 ENSRNOG00000020979 (Rat)

Gene Details

proteasome (prosome, macropain) subunit, beta type 4 (Psmb4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028484, Rat)

Protein Percentage 91.63%
CDS Percentage 86.82%
Ka/Ks Ratio 0.09706 (Ka = 0.0488, Ks = 0.5032)

Genome Location

Sequence Coding sequence

Length: 792 bp    Location: 19124354..19126731   Strand: +
Raw sequence   
>XM_004854066.1
ATGGAAGCGCTTTTGGAGTCGCGGGGTGGGCACTGGGCCGGGGGTCCGGCCCCAGGACAGTTTTACCGCGTCCCGTCCACTCCCGCTTCCTTCTTGGATCCAGCGTCCGCACTCCACGGGGATCCCGTCACGCGGACCTTGAACCCCATGGTGACCGGGACCTCGGTTCTCGGCGTCAAGTTCGACGGCGGAGTGGTGATCGCAGCCGACATGCTGGGCTCCTACGGCTCCCTGGCTCGTTTCCGTAACATCTCTCGCATTATGCGAGTCAACGACAGCACCATGCTGGGTGCCTCTGGAGACTATGCTGACTTCCAGTACTTGAAGCAGGTTCTCGGCCAGATGGTGATTGACGAGGAGTTGTTGGGAGACGGACACAGCTATAGCCCTAGAGCTATTCATTCGTGGCTGACCAGGGCCATGTACAGCCGGCGCTCGAAGATGAACCCCCTGTGGAACACTATGATCATTGGAGGCTGTGCAGATGGAGAGAGCTTCCTCGGTTACGTGGACATGCTTGGTGTAGCCTACGAAGCCCCTTCGCTGGCCACTGGTTATGGTGCATACTTGGCTCAGCCTCTGCTTCGAGAAGTTCTGGAGAAGCAGCCAGTGCTGAGCCAGACTGAGGCCCGCGAGCTGGTAAAACGCTGCATGCGCGTGCTGTACTATCGAGATGCCCGTTCGTATAACCGGTTTGAAATCGCCACTGTAACTGAAAAAGGTGTTGAAATAGAGGGACCGCTGTCTGCTGAGACCAACTGGGATATTGCCCACATGATCAGTGGCTTTTAA

Related Sequences

XP_004854123.1 Protein

Psmb4 PREDICTED: proteasome subunit beta type-4 isoform X1 [Heterocephalus glaber]

Length: 263 aa      View alignments
>XP_004854123.1
MEALLESRGGHWAGGPAPGQFYRVPSTPASFLDPASALHGDPVTRTLNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMIIGGCADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVKRCMRVLYYRDARSYNRFEIATVTEKGVEIEGPLSAETNWDIAHMISGF