Sequence details NCBI ID: XM_004854025.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema6c
Gene Name sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C, transcript variant X3
Entrez Gene ID 101707121

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA6C ENSCPOG00000002176 (Guinea pig)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001973, Guinea pig)

Protein Percentage 88.96%
CDS Percentage 88.5%
Ka/Ks Ratio 0.1594 (Ka = 0.0592, Ks = 0.3712)

SEMA6C ENSG00000143434 (Human)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene Match (Ensembl Protein ID: ENSP00000357909, Human)

Protein Percentage 84.59%
CDS Percentage 85.09%
Ka/Ks Ratio 0.15703 (Ka = 0.0829, Ks = 0.528)

Sema6c ENSMUSG00000038777 (Mouse)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000088331, Mouse)

Protein Percentage 82.38%
CDS Percentage 81.83%
Ka/Ks Ratio 0.14299 (Ka = 0.1005, Ks = 0.7028)

Sema6c ENSRNOG00000021101 (Rat)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C (Sema6c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000050221, Rat)

Protein Percentage 81.91%
CDS Percentage 82.84%
Ka/Ks Ratio 0.17103 (Ka = 0.1016, Ks = 0.5943)

Genome Location

Sequence Coding sequence

Length: 2826 bp    Location: 18707957..18720731   Strand: +
Raw sequence   
>XM_004854025.1
ATGCCCCGAGGCCCCCGCTTCATCCCCTTGCTGCTGCTGCTGCTGCTTGCCCCTCCCCACAGCCAGGCTGCCTTTCCCCAGGACCCCTTGCCCCTGTTCGCTTCTGACCTACAAGGTGCTTCCCCGTTGTCCTGGTTCCGGGGGCTGGAGGAGGATGCCGTGGCTGCAGACCTGGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTGGTCGCAGCCCGGGACCACATCTTCTTCTTTGACCTTCAGGCCCAAGAAGAAGGGGAAGGGCTGGTGCCCAGCAAGTACCTGACATGGAGGAGCCAAGGTGTGGAGAACTGTGCCGTTCGGGGAAAGCAGACGGAAGAATGCTACAACTACATTCGTGTCCTCGTTCCCCGGGACTCCCAGACACTCCTCGCTTGTGGAACGAACTCATTCAACCCCAAGTGCCGCAGCTACGGGATAACTTCACTGCAGCAGGAGAGTAAGGAGATGGATGGGCGGGCTCGATGCCCCTTTGATGCCACCCAGTCCAATGTAGCCATCTTTGCAGAGGGCAGCCTGTACTCAGCCACGAACACAGACTTCCAGGCCAGCGACCCTGTGGTTTACAGAAGCCTTGGGCCTCTGCCCCTGCTCCGCACTGCCAAGCACGACTCCAAGTGGCTCCGAGAGCCACACTTTGTCCACGCCTTGGAGCACGGAGACCACATTTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGATGCCCGGCTGGGGAGGGTGCAGTTCTCCCGTGTGGCCCGTGTGTGTAAACGTGACATGGGCGGCTCCAGCCGGGCCCTGGACGGCCAGTGGACCTCCTTCCTGAAGCTGCGGCTCAACTGCTCTGTCCCTGGGGACCCCACCTTTTACTTTGACGTCCTGCAGGCCTTGACTGGGCCCTCGAGCCTGCATGGCCGCGCTGCACTCTTTGGGGTCTTCACCACCCAGACCAATAGCATCCCGGGCTCTGCAGTCTGTGCCTTCTACCTGGATGTTATTGAACGTGGCTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCTTGGACACCTGTGTCTGAGGACAGGGTCCCCTCACCCAGGCCCGGATCCTGTGCGGGCGTGGGTGGAGCTGCCTCGTTCTCCTCCTCTAAAGACCTTCCTGACGACGTCCTGGCCTTCATCAAGGCTCACCCCCTGCTGGACCCCGCAGTCCCCCCTGCCATCCAGCAGCCTCTCCTCACCCTCACCAGCAGGGCTCTCCTGACGCAGGTAGTGGTGGATGGCAAGGCCGGGCTCAATGGCAACGCCACGGTCCTGTTCCTCGGCTCGGAGGACGGGATGGTGCTGAAGGTGCTGCCCCCCAGCGGCCGTCCCAGGCCTGATCCCATCCTATTGGAAGAAATTGACGCCTACAGCCCTGCCCGGTGCAGTGGGAAGCAGGCAGCCCAAACAGCACGACGCATCATAGGGCTGGAGCTGGACACCGAGGGTCACAGGCTCTTTGTGGCTTTTTCCGGCTGTGTCATCTCCCTCCCTGTCAGCCGCTGTGCTCGGCATGGGGCCTGTCAGAGGAGCTGTCTGGCTTCTCAGGATCCATACTGTGGATGGCATAGCTCCAGAGGCTGTGTGGATATCAGGGGACCTGGAGGGGCCAATGTAGATCAGGCTGGAAACCAGGACTCCATCCAGCATGACGACTGCCAAGATGGAGCCACTGGGAGTCAGTCTGGTCCCGGGGATTCCGCTTACGTGCTTCTGGGTCCTGGCCCTTCCCCTGAGGCCCCCAGGCCCCCCAGTGATGCCCCGCTGGGGCCCCAGGCTTCCACTCTTGGAGCTCACACGCAGGGCGTGCGCCGGGACCTCCCCGCGGCCTCACCCTCGCGGTCCGTCCCCGTCCCGCTCCTCCTGGCCAGTGTGGCCGCAGCCTTCGCCCTGGGCGCCTCCATCTCTGGCCTCCTGGTGTCCTGTGCTTGTCGCCGCGCGCACCAACGAGGGAACAAGGACATCGAGACCCCGGGGCTCCCGCGCCCTCTCTCCCTCCGCAGCCTGGCGCGGCTGCACGGGGCCGGCGCGGAGACCCCACCGCCAGCCAAGGACAGCGACGCGGCGCAGACGCCGCAGCTCTACAGCACCTTCCTGCCCCCGCCGGACGGCGGGCCCCCGCCCGAGCTGGCCTGCCTCCCCACGCCGGAGTCCACGCCCGAGCTGCCGGTGAAGCACCTCCGCGCGCCCCCGGCGCCCTGGGAGTGGAACCAGAACGGGAACAACGCCAAGGAAAGCGCGGGCCGCGCGCGGGGCGGCCACGTGGCAGGCGGGCCCGTGCCGCGCGTGCTGGTGAGGCCGCCGCCGCCCGGCTGCCCGGGGCAGGCGGTGGAGGTCACCACGCTGGAGGAACTGCTGCGCTACCTGCACGGCCCGCAGCCACCCCGCCCCGCCGCCGACCCTGCCCCCTTCGCGCCGCGCGCTCTCTCGCCCGAGCCCAACCCCCTGTCGCGCGAGAGCGTGCCTCCCCTGCGGCTGGACGTGCCCCCGGACGGCGGCTGCGCGGGGCGGCCCGCGCTTTCCGCCCCCGCACCCCGGCTGGGCGTCGGCACGAGCCGCAGGCCTCCCTTCCCCACGCACCGCGCGCCCCCCGCGCTGCTCACGCGCGTGCCCTCCGGCGGCGCCTCAAGGTACTCGGCAGGGCCGGGCCGGCACCTCCTCTACCTGGGCCGACCCGAGGGTTTCCGCGGCCGCGCCCCGAAGAGGGTGGACGCGGAGAAGCCACCGCCGTCCCCGAAGCCGCCCCTGGCCGTGCCCAGCGGCGGCCACTTTAACTTCTGA

Related Sequences

XP_004854082.1 Protein

Sema6c PREDICTED: semaphorin-6C isoform X3 [Heterocephalus glaber]

Length: 941 aa      View alignments
>XP_004854082.1
MPRGPRFIPLLLLLLLAPPHSQAAFPQDPLPLFASDLQGASPLSWFRGLEEDAVAADLGLDFQRFLTLNRTLLVAARDHIFFFDLQAQEEGEGLVPSKYLTWRSQGVENCAVRGKQTEECYNYIRVLVPRDSQTLLACGTNSFNPKCRSYGITSLQQESKEMDGRARCPFDATQSNVAIFAEGSLYSATNTDFQASDPVVYRSLGPLPLLRTAKHDSKWLREPHFVHALEHGDHIYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSSRALDGQWTSFLKLRLNCSVPGDPTFYFDVLQALTGPSSLHGRAALFGVFTTQTNSIPGSAVCAFYLDVIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGGAASFSSSKDLPDDVLAFIKAHPLLDPAVPPAIQQPLLTLTSRALLTQVVVDGKAGLNGNATVLFLGSEDGMVLKVLPPSGRPRPDPILLEEIDAYSPARCSGKQAAQTARRIIGLELDTEGHRLFVAFSGCVISLPVSRCARHGACQRSCLASQDPYCGWHSSRGCVDIRGPGGANVDQAGNQDSIQHDDCQDGATGSQSGPGDSAYVLLGPGPSPEAPRPPSDAPLGPQASTLGAHTQGVRRDLPAASPSRSVPVPLLLASVAAAFALGASISGLLVSCACRRAHQRGNKDIETPGLPRPLSLRSLARLHGAGAETPPPAKDSDAAQTPQLYSTFLPPPDGGPPPELACLPTPESTPELPVKHLRAPPAPWEWNQNGNNAKESAGRARGGHVAGGPVPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRPAADPAPFAPRALSPEPNPLSRESVPPLRLDVPPDGGCAGRPALSAPAPRLGVGTSRRPPFPTHRAPPALLTRVPSGGASRYSAGPGRHLLYLGRPEGFRGRAPKRVDAEKPPPSPKPPLAVPSGGHFNF