Details from NCBI annotation

Gene Symbol Lysmd1
Gene Name LysM, putative peptidoglycan-binding, domain containing 1, transcript variant X1
Entrez Gene ID 101705420

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LYSMD1 ENSCPOG00000002183 (Guinea pig)

Gene Details

LysM, putative peptidoglycan-binding, domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001979, Guinea pig)

Protein Percentage 89.43%
CDS Percentage 89.43%
Ka/Ks Ratio 0.23509 (Ka = 0.0624, Ks = 0.2655)

LYSMD1 ENSG00000163155 (Human)

Gene Details

LysM, putative peptidoglycan-binding, domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000357904, Human)

Protein Percentage 86.78%
CDS Percentage 88.4%
Ka/Ks Ratio 0.26588 (Ka = 0.0762, Ks = 0.2867)

Lysmd1 ENSRNOG00000021099 (Rat)

Gene Details

LysM, putative peptidoglycan-binding, domain containing 1 (Lysmd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028640, Rat)

Protein Percentage 81.86%
CDS Percentage 83.19%
Ka/Ks Ratio 0.24556 (Ka = 0.114, Ks = 0.4641)

Genome Location

Sequence Coding sequence

Length: 684 bp    Location: 18684355..18695035   Strand: +
>XM_004854019.1
ATGGCTTCTCCCTCTAGACAGCCGCCCCTCGGGGGCTCAGGGCTGCTTCAAGGGAGCCGGGCTCGCTCTTATGGAAGCCTGGTGCAGTCAGCCTGCTCCCCGGTGAGGGAAAGACGCCTGGAACATCAGCTGAAGCCCGGAGACACCCTAGCTGGACTAGCACTCAAATACGGAGTGACGATGGAACAGATTAAGCGTGCAAACCGCCTTTATACTAATGACTCCATCTTCCTGAAGAAAACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGTTCAATGGTTTGGATTCTGAGGAAGAGAAAGATGGAGAGGAAGAGGTGAGCCCAAGCAAGGGTGACTCATGGCCACACTCGGCTGAGAGCAGTAAACAAGAGCCGGGTTCAGAGCGCACCAAAGGTGACATCCTCCCCACACCTGGCCAGGACTCCCCCGGGCCCACCCATGACCTCTCCGCCTCCGATTTCCTTAAGAAGCTTGACTCACAGATCAGCCTGTCAAAGAAGGTTGCTGCACAGAAGCTGAGCAAAGGAGAAAGTGGGGTGCCGGGGAAGGACCCACGTTTCCACCTGAGCTCCCCGAGGATGCAGCAACGAGCAGTCCTAGGTCCTGTGCCACTGACTCGGACCTCTCGGACTCGGACACTTCGGGACCAGGAGGATGAGATCTTCAAACTCTGA

Related Sequences

XP_004854076.1 Protein

Lysmd1 PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1 [Heterocephalus glaber]

Length: 227 aa     
>XP_004854076.1
MASPSRQPPLGGSGLLQGSRARSYGSLVQSACSPVRERRLEHQLKPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEEVSPSKGDSWPHSAESSKQEPGSERTKGDILPTPGQDSPGPTHDLSASDFLKKLDSQISLSKKVAAQKLSKGESGVPGKDPRFHLSSPRMQQRAVLGPVPLTRTSRTRTLRDQEDEIFKL