Details from NCBI annotation

Gene Symbol Prpf3
Gene Name pre-mRNA processing factor 3, transcript variant X1
Entrez Gene ID 101720204

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF3 ENSCPOG00000008068 (Guinea pig)

Gene Details

pre-mRNA processing factor 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007254, Guinea pig)

Protein Percentage 99.41%
CDS Percentage 95.95%
Ka/Ks Ratio 0.01555 (Ka = 0.0026, Ks = 0.17)

PRPF3 ENSG00000117360 (Human)

Gene Details

pre-mRNA processing factor 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000315379, Human)

Protein Percentage 99.56%
CDS Percentage 95.02%
Ka/Ks Ratio 0.00999 (Ka = 0.002, Ks = 0.204)

Prpf3 ENSMUSG00000015748 (Mouse)

Gene Details

PRP3 pre-mRNA processing factor 3 homolog (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000015892, Mouse)

Protein Percentage 99.12%
CDS Percentage 92.24%
Ka/Ks Ratio 0.01109 (Ka = 0.004, Ks = 0.364)

Prpf3 ENSRNOG00000025629 (Rat)

Gene Details

pre-mRNA processing factor 3 (Prpf3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060155, Rat)

Protein Percentage 96.23%
CDS Percentage 89.74%
Ka/Ks Ratio 0.05105 (Ka = 0.0227, Ks = 0.4455)

Genome Location

Sequence Coding sequence

Length: 2052 bp    Location: 18074550..18097191   Strand: +
>XM_004853969.1
ATGGCACTGTCTAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTGAAGAGGGTACTGGGTTTCTCAGAGCCCACAGTGGTCACAGCAGCACTGAATTGTGTGGGGAAGGGCATGGACAAGAAAAAGGCAGCTGACCATCTCAAACCTTTTCTTGATGATTCTACACTCCGATTTGTGGATAAACTGTTTGAAGCTGTAGAGGAAGGCCGAAGCTCCAGACATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAGGAGGTGTTTGGTGATGACTCTGAAATCTCCAAGGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTAGAAGAGGAGCCGGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCTCCAGATTAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTAAGCTTCATTAGCCCCCCGACACCTCAGCCAAAGACTCCTTCTTCATCCCAGCCAGAGCGACTTCCAATAGGCAACACTATACAGCCTTCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTACAAGCTCGAATCCAGGCCCAGCTGGCACTGAAGCCAGGGCTCATTGGCAATGCCAACATGGTGGGCCTAGCTAATCTCCATGCCATGGGCATTGCTCCCCCGAAAGTAGAGTTAAAAGATCAAACGAAACCTACACCACTGATCCTAGATGAGCAAGGACGGACTGTAGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACACTGAAAGCCAATATTCGCGCTGTAAAGAGGGAACAGTTCAAGCAGCAGCTCAAAGAAAAGCCATCAGAAGACATGGAGTCCAATACTTTTTTTGACCCCCGAGTCTCAATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTTCATGACAAGGGTAAATTTGAGAAGATTGCTCAACGATTACGGACAAAGGCTCAACTGGAGAAGCTGCAGGCAGAGATTTCACAGGCTGCTCGAAAAACAGGCATTCATGCTTCAACTAGGCTTGCCCTCATTGCTCCTAAGAAAGAGCTAAAGGAAGGAGATATCCCAGAAATCGAGTGGTGGGACTCTTACATCATACCCAATGGCTTTGACCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGGGTTTATCTTACCAAGAAGGAACAGAAGAAACTTCGGAGGCAAACTCGAAGGGAAGCACAGAAGGAACTGCAAGAGAAAGTAAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTAAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCTACAAAGGTAGAAGCCCATGTCAGAGCTCAGATGGCTAAAAGACAGAAAGCTCATGAAGAGGCCAACGCTGCCCGAAAACTTACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTTCGAAATTTGAGCAACCCATCCAAGAAGTTCAAGATTGAGGCCAATGCTGGGCAGCTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACGAAGGGAGATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACTAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGATATGAAGTTTAAACAATGCCCTACAGAGAACATGGCTCGTGAACATTTCAAAAAGCATGGGGCCGAGCACTACTGGGACCTTGCACTGAGTGAATCTGTGTTGGAGTCCACTGACTGA

Related Sequences

XP_004854026.1 Protein

Prpf3 PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1 [Heterocephalus glaber]

Length: 683 aa      View alignments
>XP_004854026.1
MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHASTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPSKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGDMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD