Details from NCBI annotation

Gene Symbol Pdzk1
Gene Name PDZ domain containing 1, transcript variant X5
Entrez Gene ID 101696284

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDZK1 ENSCPOG00000005364 (Guinea pig)

Gene Details

PDZ domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004826, Guinea pig)

Protein Percentage 84.6%
CDS Percentage 87.2%
Ka/Ks Ratio 0.37432 (Ka = 0.1024, Ks = 0.2734)

PDZK1 ENSG00000174827 (Human)

Gene Details

PDZ domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000342143, Human)

Protein Percentage 82.72%
CDS Percentage 84.01%
Ka/Ks Ratio 0.29227 (Ka = 0.1203, Ks = 0.4117)

Pdzk1 ENSMUSG00000038298 (Mouse)

Gene Details

PDZ domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000102685, Mouse)

Protein Percentage 75.92%
CDS Percentage 78.96%
Ka/Ks Ratio 0.22225 (Ka = 0.1581, Ks = 0.7116)

Pdzk1 ENSRNOG00000000096 (Rat)

Gene Details

PDZ domain containing 1 (Pdzk1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000107, Rat)

Protein Percentage 76.31%
CDS Percentage 78.51%
Ka/Ks Ratio 0.2274 (Ka = 0.1627, Ks = 0.7153)

Genome Location

Sequence Coding sequence

Length: 1554 bp    Location: 17057371..17023853   Strand: -
>XM_004853901.1
ATGGCTGCCGTCTTCAATGTCCGAGAATGCAAACTGTCCAAACTGGAAGGGCAAAGCTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGACGGGCACCTGGTCCGGGTGATTGAGAAGGGAAGCCCAGCAGAGAAGGCTGGGCTCCTGGATGGAGACAGAGTTCTCAGGATCAATGGTGTCTTTGTCGACAAGGAAGAGCACATGCAGGTGGTGGAGCTGATCAGAAAGAGCGGGAATTCGGTGACTTTATTAGTTCTGTGTGGGGATTCCTATGAGAAAGCTGTGAAGAAAGGGGTGGACTTGAAAGAGTTGGATCAAAGCCAGGAGCTGGATTTGAGTGACACGAAAGCAGCCCCAGTGATGAACGGAGGAGTGACTTGCACCCAGCCGCGGCTCTGCTACCTGGTAAAGGAGGGGAACAGCTACGGCTTCTCTCTGAAAACTGTCCAAGGTAAAAAGGGAGTACACATGACTGACATAACACCTCAGGGTGTGGCTATGAAAGCTGGAGTCCTGCCTGATGATCATTTGATTGAAGTGAATGGAGAGAATGTAGAGAATGCCAGCCACGAGAAAGTGGTTGAAAAGGTGAAGAAGTCTGGAAACCGCATCATGTTCCTTCTTGTGGACAAAGAAACCGACAAGTACCATCGTGAACAAAAGATACCATTCAAGAGGGAAACAGCAAGTTTGAAACTGCTGCCCCACCAGCCTCGAGTCGTGGAGATGAAGAAGGGAAGCAATGGCTACGGTTTCTACCTGAGGGCGGGCCCAGAACAGAAAGGTCAAACCATCAAGGACATAGATTCTGGAAGTCCGGCAGAGGCGGCTGGCCTGAAGAAAAACGACCTGGTAGTTGCTGTCAATGGCGAGTCTGTGGAGACCCTGGATCATGACGGTGTGGTGGAAATGATTAGGAAGGGGGGAGAGGAGACGTCACTGCTGGTGGTGGACAAAGAGACGGATGATCTGTACAGACTGGCTCAATTTTCTCCATTCCTCTACTATAAAAATCAAGAATTGCCTAATGGTTCTGTCAAGGAGGTTCCAGCCTCTGCTCCTCTGGAGGACTCAGGTCCAGACACCACAGAGGAAGTAGCGGATCATAAGCCTAAACTCTGCAGGCTGATGAAAGGTGAAAATGGCTATGGCTTTCACTTAAATGCGATTCGGGGACTGCCAGGCTCATTCGTCAAAGAGGTACAGAAGGGCGGCCCGGCCGATGCAGCCGGGCTGGAGGATGAGGATGTGATCGTTGAAGTGAATGGGGTGAATGTGCTGGATGAACCCTATGAGAAGGTGGTGGACAAAATCCAGAGCAGTGAGAAGAACATCACACTCTTGGTCTGCGGAAGGAAGGCCTATGATTACTTCCAAGCTAAGAAAATCCCAATTATTTCCTCCATGGCTGATCCACTGGACGTGTGCCCTGATTCCAAAGAAGAAACAGTGGTAGAGTCAGAGCATGACTCACACATGGTGAAAGAAAGAGTGAGTGTGGTGATTTCTTTTCCTGATCTGTCTTACCCCAGAGTATGGTACAGTCCTTAA

Related Sequences

XP_004853958.1 Protein

Pdzk1 PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF3 isoform X5 [Heterocephalus glaber]

Length: 517 aa      View alignments
>XP_004853958.1
MAAVFNVRECKLSKLEGQSYGFFLRIEKDTDGHLVRVIEKGSPAEKAGLLDGDRVLRINGVFVDKEEHMQVVELIRKSGNSVTLLVLCGDSYEKAVKKGVDLKELDQSQELDLSDTKAAPVMNGGVTCTQPRLCYLVKEGNSYGFSLKTVQGKKGVHMTDITPQGVAMKAGVLPDDHLIEVNGENVENASHEKVVEKVKKSGNRIMFLLVDKETDKYHREQKIPFKRETASLKLLPHQPRVVEMKKGSNGYGFYLRAGPEQKGQTIKDIDSGSPAEAAGLKKNDLVVAVNGESVETLDHDGVVEMIRKGGEETSLLVVDKETDDLYRLAQFSPFLYYKNQELPNGSVKEVPASAPLEDSGPDTTEEVADHKPKLCRLMKGENGYGFHLNAIRGLPGSFVKEVQKGGPADAAGLEDEDVIVEVNGVNVLDEPYEKVVDKIQSSEKNITLLVCGRKAYDYFQAKKIPIISSMADPLDVCPDSKEETVVESEHDSHMVKERVSVVISFPDLSYPRVWYSP