Sequence details NCBI ID: XM_004853887.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Chd1l
Gene Name chromodomain helicase DNA binding protein 1-like, transcript variant X2
Entrez Gene ID 101723018

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CHD1L ENSCPOG00000009000 (Guinea pig)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008084, Guinea pig)

Protein Percentage 90.61%
CDS Percentage 90.61%
Ka/Ks Ratio 0.23258 (Ka = 0.0554, Ks = 0.2383)

CHD1L ENSG00000131778 (Human)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene Match (Ensembl Protein ID: ENSP00000358262, Human)

Protein Percentage 88.53%
CDS Percentage 89.54%
Ka/Ks Ratio 0.24799 (Ka = 0.0649, Ks = 0.2616)

Chd1l ENSMUSG00000028089 (Mouse)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029730, Mouse)

Protein Percentage 85.15%
CDS Percentage 84.06%
Ka/Ks Ratio 0.16242 (Ka = 0.0849, Ks = 0.5225)

Chd1l ENSRNOG00000017669 (Rat)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000048925, Rat)

Protein Percentage 85.31%
CDS Percentage 84.53%
Ka/Ks Ratio 0.16335 (Ka = 0.0817, Ks = 0.5002)

Genome Location

Sequence Coding sequence

Length: 2679 bp    Location: 16178097..16241869   Strand: +
Raw sequence   
>XM_004853887.1
ATGGAGGGCGACGCGCCCGGCTTCCTGCTGGCCCTCGGAGCTCAGGGCAGACCCGAGGCGGTGCGGTCGCGGGTGCAGGCGCAGGACTTGCGGCAGTGGGGCCTGGCGGGGATTCATTTACGCCCTTATCAACTGGAGGGAGTCAACTGGCTAGTCGAGTGCTTCCACTGTCGAAATGGCTGCATCCTGGGAGATGAGATGGGTCTGGGTAAGACCTGTCAGACGATTGCTCTCTTCATTTACTTGGAGGGAAGGTTAAATGACGAAGGACCCTTTCTGATTCTTTGTCCCTTGTCTGTTTTGAGCAACTGGAAGGAAGAGATGGAAAGATGTGCTCCAGGCCTTTCCTGTGTAACATATGCAGGCGACAAGGAGGAAAGGGTCCACCTTCAGCAAGTCTTAACACAGGACTCACATTTTCATGTGCTGCTGACTACTTATGAGATTTGCTTGAGAGATGCATCATTTCTAAAATCCTTCTCTTGGAGTGTTCTTGTTGTGGATGAAGCTCACAGATTGAAAAACCAAAGCTCGCTGCTGCATAAGACACTTTCAGAGTTCTCAGTGGTCTTCAGTCTCCTGTTGACTGGAACTCCCATACAGAACAGCCTCCAAGAGCTCTACTCCCTCCTCAGTTTTGTGGAGCCCGATCTCTTTTCTAAGGAGCAGGTGGAAGATTTTGTTCAACGTTATCAGGACATTGAGAAAGAATCTAAGTCAGCGAGTGAACTGCACAGACTCTTGCAGCCATTTTTGTTGAGGCGAGTGAAAGCGGAAGTAGCTACAGAGCTTCCCAAGAAGACAGAAGTAGTGATATACCACGGGATGTCAGCATTGCAGAAAAAATACTACAAGGCCATTTTGATGAAAGATCTAGATGCATTTGAAAATGAGATGGCAAAGAAAGTTAAACTTCAGAACATTTTGTCCCAGCTTAGAAAATGTGTGGATCACCCATATTTGTTTGATGGTGTAGAGCCAGAACCTTTTGAAGTTGGAGACCACCTGATTGAAGCAAGTGGGAAACTTCACCTGCTGGATAAGCTGTTGGCATTCCTGTATTCAAGGGGCCATCGGGTTTTACTTTTCTCCCAAATGACCCAGATGTTGGATATTCTTCAAGACTATATGGATTACAGAGGTTACAGCTATGAGCGTGTGGATGGTTCTGTGAGAGGAGAAGAGAGACACTTGGCCATCAAGAACTTTGGACAGCAGCCCATTTTTGTTTTTCTCCTGAGTACCAGAGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTTTATTGACAGTGATTTTAATCCTCAGAATGACTTGCAGGCAGCTGCCAGGGCTCACCGAATTGGCCAGAACAAGCCTGTTAGAGTCATTCGGCTGATCGGCCGAGACACTGTGGAGGAAACAGTCTGTAGGAGAGCAGCCTCCAAGCTGCAGCTCGCCAGTGTGGCCGTAGGAGGAGGCCACTGTGCTCTGGGAGCCCGCCAGCCATTGGGCGACGCCGACCTCCAGTTGAGTGAGATACTCAAATTCGGCTTGGATAAACTGCTGTCCTCTGAGGGGAGCACCATGGATGAAATCGATTTGGAGTCCATCCTGGGAGAAACCAAAGCTGGCCAGTGGGCCTCTGATGCCTTGCCTGCAGCAGGAGAGGGGAGCGGAGAGCAAGAGGAAGGAAAAAACCACATGTACATATTTGAAGGTAAAGATTATTCTAAAGAGCCCTCTAAGGAAGACAGAAGATCATTTGAACAACTAGTGAATCTTCAGAAAACCCTTTTGGAGAAAACAAGTCAAGGGGGCCGGTCACTCCGAAATAAAGGCAGTGTTCTTGTCCCGGGCCTTGTGGAAGGTTCTAGCAAAAGGAAGCGGATTCTGAGCCCTGGAGAACTGGAAGACAGGTGGAAGAAAAGACAAGAAGCAGCAGCCAAGAGAAAGAGACTGGTAGAGGAGAAGAAGAGGGAGAAGGAAGAGGTTGAACATAAGAAAAAGATGGCCTGGTGGGAGTCCAACAATTACCAGTCTTTCTGCCTGCCCTCCGAGGAGAGCGAGCCACAGGACCTTGATGGGGGCAAAGAAGAGAGTGCTGCTGAGCTGAATTATGAAGACCATGACTCAGCCTCCATCCAGTATGTCAGTGGTGATGTCACCCACCCACAGGCCGGGGAGGAGGATGCTTTCATCGTGCACTGCGTAGATGACTCTGGCCGCTGGGGCAGAGGTGGTTTATTCACAGCTCTGGAAACACGATCAGCTGAACCAAGAAAAATATATGAGCTGGCTGGAAAAATGAAAGACTTGAGTTTGGGAGCTGTCCTTTTATTTCCTATTGATGATAAAGAGTCAAGAAACAAAGGGCAAGATTTGTTGGCTTTGATTGTGGCTCAGCATCGTGATTGTGCCAATGTCCTGTCTGGCATTAAGATGACAGCCCTAGAAGAGGGCCTGAAAAAGATATTTTTAGCAGCAAAAAAAAAGAAAGCAAGTGTTCATCTTCCACGCATTGGGCATGCCACGAAGGGTTTTAACTGGTATGGCACTGAGCGTCTTATTAGGAAACATTTGGCTGCAAGAGGCATCCCAACTTACATATATTACTTTCCTAGAAACAAGGGTTCTATCAGTCATTCAAAGTCCCCATCTTCCTCCTCAACACAACTGGTGCCTTAA

Related Sequences

XP_004853944.1 Protein

Chd1l PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform X2 [Heterocephalus glaber]

Length: 892 aa      View alignments
>XP_004853944.1
MEGDAPGFLLALGAQGRPEAVRSRVQAQDLRQWGLAGIHLRPYQLEGVNWLVECFHCRNGCILGDEMGLGKTCQTIALFIYLEGRLNDEGPFLILCPLSVLSNWKEEMERCAPGLSCVTYAGDKEERVHLQQVLTQDSHFHVLLTTYEICLRDASFLKSFSWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKESKSASELHRLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASGKLHLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLTAADTVIFIDSDFNPQNDLQAAARAHRIGQNKPVRVIRLIGRDTVEETVCRRAASKLQLASVAVGGGHCALGARQPLGDADLQLSEILKFGLDKLLSSEGSTMDEIDLESILGETKAGQWASDALPAAGEGSGEQEEGKNHMYIFEGKDYSKEPSKEDRRSFEQLVNLQKTLLEKTSQGGRSLRNKGSVLVPGLVEGSSKRKRILSPGELEDRWKKRQEAAAKRKRLVEEKKREKEEVEHKKKMAWWESNNYQSFCLPSEESEPQDLDGGKEESAAELNYEDHDSASIQYVSGDVTHPQAGEEDAFIVHCVDDSGRWGRGGLFTALETRSAEPRKIYELAGKMKDLSLGAVLLFPIDDKESRNKGQDLLALIVAQHRDCANVLSGIKMTALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLIRKHLAARGIPTYIYYFPRNKGSISHSKSPSSSSTQLVP