Sequence details NCBI ID: XM_004853760.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptpn22
Gene Name protein tyrosine phosphatase, non-receptor type 22 (lymphoid), transcript variant X1
Entrez Gene ID 101711810

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTPN22 ENSCPOG00000001039 (Guinea pig)

Gene Details

protein tyrosine phosphatase, non-receptor type 22 (lymphoid)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000936, Guinea pig)

Protein Percentage 83.81%
CDS Percentage 89.62%
Ka/Ks Ratio 0.47641 (Ka = 0.0903, Ks = 0.1896)

PTPN22 ENSG00000134242 (Human)

Gene Details

protein tyrosine phosphatase, non-receptor type 22 (lymphoid)

External Links

Gene Match (Ensembl Protein ID: ENSP00000352833, Human)

Protein Percentage 79.98%
CDS Percentage 88.1%
Ka/Ks Ratio 0.46382 (Ka = 0.1049, Ks = 0.2262)

Ptpn22 ENSMUSG00000027843 (Mouse)

Gene Details

protein tyrosine phosphatase, non-receptor type 22 (lymphoid)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029433, Mouse)

Protein Percentage 71.3%
CDS Percentage 79.49%
Ka/Ks Ratio 0.35165 (Ka = 0.179, Ks = 0.509)

Ptpn22 ENSRNOG00000019614 (Rat)

Gene Details

protein tyrosine phosphatase, non-receptor type 22 (lymphoid) (Ptpn22), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026556, Rat)

Protein Percentage 70.79%
CDS Percentage 78.69%
Ka/Ks Ratio 0.35476 (Ka = 0.1877, Ks = 0.5291)

Genome Location

Sequence Coding sequence

Length: 2424 bp    Location: 9550990..9472913   Strand: -
Raw sequence   
>XM_004853760.1
ATGGACCAGCTAGAAATCCTGCAGAAGTTCCTGGATGAGGCCCAAAACAAGAAAATTAACAAAGAGAAGTTTGCGAATGAATTTCTGAAGCTGAAAAAGCAATCCACCAAGTTCAAGGCAGACAAAACCTATCCTACAGCTGTGGCTCAGAAGCCCAAGAATATAAAGAAAAACAGATATAAGGACATTTTGCCCTATGATCATAGCCGGGTAGAGCTGTCCCTGATAACTTCTGATGAGGATTCCAGCTACATCAATGCCAACTTCATTAAGGGAGTGTATGCGCCCAAGGCATATATTGCCACACAAGGCCCTTTACCTACAACTCTCCTGGACTTCTGGAGGATGATTTGGGAACACAGTGTTCTGATCATTGTTATGGCATGTATGGAGTTTGAAATGGGAAAGAAAAAGTGTGAGCGCTACTGGGCTGAGCCAGGACAGATGCAGCTGCAGTTTGGTCCTTTCTCCATATCCTGTGAAGCTGAAAAAAGGAAATCCGATTATATAATCAGGACTCTAAAAGCCAAGTTCCATAGTGAAACTCGAACTATCTACCAGTTTCATTATAAGAATTGGCCAGACCATGATGTGCCTTCATCTATAGACCCTATTCTTGAGCTCATCTGGGACGTGCGTTGTTACCAGGAGGATGACAGTGTTCCCATATGCATTCACTGCAGTGCTGGCTGTGGAAGGACTGGGGTGATTTGTGCTATTGATTATACATGGATGTTGCTAAAAGATGGGATAATTCCTGAGAACTTCAGTGTTTTTAGTTTGATCCAGGAAATGCGAACACAGAGGCCTTCATTAGTTCAAACTCCGGAACAATATGAACTGGTCTACAGTGCTGTATTAGAACTTTTTAAGAGACATATGGATGTTATTGGAGATAAACAGTCTGGAAGAAAGATTCAAGCAAAGTACTCAATTCCTGAGCAAAATCCTACTCCACAAGCAGATTTTTGTTCTCCTAATTTACCAAAAGGCTCCATAAAAGAAGCAAAAATGATGAACCAACAGAGCAAACAAAAGTTGAAGGCGGAAAACGCAGAAACTTCTTCCTTTAACTTTAGGACTTCTAAAATAAGTGCAAAAGTTTTGCACCCTGCTAAATCAAGCCCATCTTTTGACTTTTTGGAGCTAAATTACAGTTGTAACAAAAATGTTGACATAACCAAGAAATGGCAGACAAAGACATTATCAACAGTTGGAGAACCTCTTCAGAAGCACAAAAGTTTGGACTTCAGTTCCATTCTGTTGGGGGCATGTCCTAATTCTCAATCTATAAATGCAGCAGGCACATGTTTTAATTCAAGGGGGCCAATAACACGAACCAAATCAACTCCCTTTGGATTGATACAGCAGAGACAAACCGAGGCGTTGGACATCAAGGAAAATTTTTCATGTTTGGAATCTCAACCACATGATTCTTATCTTGTGGAGTTCCAGGCTAAGAAAGTCATGCATGCTTCTTCAGAAGAACTGAATTATTCACTGCCTTCTGACTCTAACCACCAAACGTGTGATGACTTTGATGTAAAGCAGCATGGCTCCAGTGCTTTGAGTGTGTATTCTTGCATGTCTTTAGTAGAAGATCCTTATTTTTTATCATTGCTTCCAAGTAGTGCTGATTCTAAGATGTCTCTTGATTTACCTGAGAAGCAAGATGGAACTGTTTTTCCTCACTCTTCGTTGCCAGCATCCTCTACAACCCTCTTTTCTTATTACAACTCAAATGATTCTCTAGCATTAAATCCTCTGACCAGTTTTTCCTCACGACTGAACCAAGAGACAGCTGTAGTGGCAACGTCTACAAAGATAGATGATGAAATCCCCCCTCCACTTCCTGAACGAACACCTGAATCTTTTATTGTGGTAGAGGAAGCGGGTGAATTATCAACAAGTGCACCCAAATCCTTATCTTCACCTGTGAAGGTGAAAATTGGAACATCGCTGGAATGGAGTGGAACATCTGAATCAAAGACATTTGATAAGCCTGTGAGACTTAGGCCAAGCAAGAGTGTAAAACTCCGGAGTTCCAAAGCAGCTTCACGTCAAGATTCATCTCCTTCTCCACCTCCACTCCCAGAAAGAACCTTAGAGCCCTTCTTTCTTCCTAATGGAGATTGTATGCAGACCCAATCTACAGAAACTTATTCAACTAGCTGTCCTGAAACCACGGAAAATTCAACATCTTCAAAACAAACAGTGAAGACTACTGGAAAAAGTTTCACAAGGAATAAGAGTTTGAAAATTTTGCGAAACATGAAGAAGAGTATCTGTAATTCTCCCTCACCAACTAAGCCTGCAGAATCTATTCAATCAAATAATTCCAGGTCATTTCCAAATTTTGGTTTTGCAAATCGTTTTTCAAAGCCCAAAGGACCACGGAACCCACCACCATCTTGGAATATTTAA

Related Sequences

XP_004853817.1 Protein

Ptpn22 PREDICTED: tyrosine-protein phosphatase non-receptor type 22 isoform X1 [Heterocephalus glaber]

Length: 807 aa      View alignments
>XP_004853817.1
MDQLEILQKFLDEAQNKKINKEKFANEFLKLKKQSTKFKADKTYPTAVAQKPKNIKKNRYKDILPYDHSRVELSLITSDEDSSYINANFIKGVYAPKAYIATQGPLPTTLLDFWRMIWEHSVLIIVMACMEFEMGKKKCERYWAEPGQMQLQFGPFSISCEAEKRKSDYIIRTLKAKFHSETRTIYQFHYKNWPDHDVPSSIDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIQEMRTQRPSLVQTPEQYELVYSAVLELFKRHMDVIGDKQSGRKIQAKYSIPEQNPTPQADFCSPNLPKGSIKEAKMMNQQSKQKLKAENAETSSFNFRTSKISAKVLHPAKSSPSFDFLELNYSCNKNVDITKKWQTKTLSTVGEPLQKHKSLDFSSILLGACPNSQSINAAGTCFNSRGPITRTKSTPFGLIQQRQTEALDIKENFSCLESQPHDSYLVEFQAKKVMHASSEELNYSLPSDSNHQTCDDFDVKQHGSSALSVYSCMSLVEDPYFLSLLPSSADSKMSLDLPEKQDGTVFPHSSLPASSTTLFSYYNSNDSLALNPLTSFSSRLNQETAVVATSTKIDDEIPPPLPERTPESFIVVEEAGELSTSAPKSLSSPVKVKIGTSLEWSGTSESKTFDKPVRLRPSKSVKLRSSKAASRQDSSPSPPPLPERTLEPFFLPNGDCMQTQSTETYSTSCPETTENSTSSKQTVKTTGKSFTRNKSLKILRNMKKSICNSPSPTKPAESIQSNNSRSFPNFGFANRFSKPKGPRNPPPSWNI