Sequence details NCBI ID: XM_004853756.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Phtf1
Gene Name putative homeodomain transcription factor 1, transcript variant X1
Entrez Gene ID 101709757

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PHTF1 ENSCPOG00000006981 (Guinea pig)

Gene Details

putative homeodomain transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006296, Guinea pig)

Protein Percentage 93.86%
CDS Percentage 93.59%
Ka/Ks Ratio 0.1662 (Ka = 0.0319, Ks = 0.1922)

PHTF1 ENSG00000116793 (Human)

Gene Details

putative homeodomain transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000358617, Human)

Protein Percentage 95.01%
CDS Percentage 93.39%
Ka/Ks Ratio 0.10549 (Ka = 0.0242, Ks = 0.2291)

Phtf1 ENSMUSG00000058388 (Mouse)

Gene Details

putative homeodomain transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000066607, Mouse)

Protein Percentage 92.76%
CDS Percentage 89.21%
Ka/Ks Ratio 0.0826 (Ka = 0.0353, Ks = 0.4268)

Phtf1 ENSRNOG00000019785 (Rat)

Gene Details

putative homeodomain transcription factor 1 (Phtf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026863, Rat)

Protein Percentage 93.43%
CDS Percentage 89.22%
Ka/Ks Ratio 0.07264 (Ka = 0.0321, Ks = 0.4418)

Genome Location

Sequence Coding sequence

Length: 2289 bp    Location: 9415681..9379375   Strand: -
Raw sequence   
>XM_004853756.1
ATGGCCTCAAATGAGAGAGATGCTATATCGTGGTATCAAAAGAAGATTGGAGCATATGATCAGCAGATATGGGAAAAGTCAATCGAACAGACTCAGATTAAGGGGTTCAAAAATAAACCAAAAAAGATGGGTCGCATAAAACCAGACTTGATTGATGTTGACTTAATCAGAGGCTCAACATTTGCCAAAGCCAAACCTGAAATTCCATGGACATCTCTGACTCGGAAGGGGCTTGTTCGAGTTGTGTTTTTTCCATTGTTCAGCAATTGGTGGATTCAGGTTACCTCTTTAAGAATCTTTGTTTGGCTGCTACTGCTTTACCTCATGCAAGTTATAGCGATTGTATTATATCTTATGATGCCTCTTGTGAATGTAAGTGAAGTACTTGGACCCTTGTGCCTTATGCTACTCATGGGAACTGTCCACTGTCAGATTGTGTCTACGCAGATAGCAAGGCCTTTAGGAAACAATGGCAATCGGAGAAGGAGAAAATTACGAAAAACTGTAAATGGTGATGGGAGCCGAGAAAATGGAAGTAGTAACTCCTCTGATAAAGTCAGAGGAATAGAAACTTTGGAATCTGCATCCATTATTGGTGGTTTTTGGGGGACTCTCTTTGGCAACAGGATTAAAAAAGTAAAGTTACTATCTAACAAAGGGACTGAAACTGACAACCACTCAAGTTGTCTCCATCCTATCATTAAGAAGAGGCAGTGTCAACCATATTTTAGAATGTGGCAAACAAGAGAGAAAGGAAAATTTTCAGATGGAGAAAAGTGCCATAGGGAGGCATACAGGCGTTTGGGCAATGGAGTTTCAGATGACCTGTCCAGTGAGGAAGATGGTGAGGCCCGGACACAGATGATATTGTTGCGAAGGAGTGTGGAAGGGGCTTCAAGTGACAATAATTGTGAAGTTAATAGAAAATCAATACTTTCAAGGCATCTAAACTCTCAGGTAAAGAAAACCACTACAAGGTGGTGTCATATAGTACGAGATTCAGACAGTGTGGCTGAATCGGAATTTGAATCAGCAGCCTTCAGCCAGGGCTCTAGATCTGGCATGAGTGGTGGCTCTCGAAGCCTCAGCCTGTCAAGAAGAGACTCAGAAAGCACCCGCCATGACTCGGAGACTGAGGATATGCTATGGGACGACCTGCTGCATGGCCCAGAGTGCCGGTCCTCTGTCACCAGCGACAGCGAGGGGGCCCATGTGAATACCCTACACTCAGGGACCAAACGTGACCCCAAAGAAGATGTTTTTCAGCAGAACCATTTATTCTGGCTTCAGAACTCAAGTCCTGCCTCTGATCGAGTTAGTGCAATAATCTGGGAAGGAAGTGAATGCAAAAAGATGGATATGTCTGTGTTGGAAATAAGTGGTATCATCATGAGCAGGGTCAATGCATATCAGCAAGGAGTAGGTTATCAGATGCTGGGAAATGTTGTCACCATTGGATTAGCATTTTTTCCTTTTTTACATCGCCTTTTCCGGGAGAAGAGCTTTGACCAGCTAAAGTCCATTTCTGCTGAGGAGATCTTGACTCTCTTTTGTGGAGCTCCACCTGTTATATCTATTATTATTTTGTCTATAATTAATTTTTTTGAAAGATTGTGTCTTACGTGGATGTTTTTTTTTATGATGTGTGTGGCAGAGAGAACATATAAACAGAGATTTTTATTTGCAAAACTCTTCAGTCATATTACTTCTGCCAGAAAAGCAAAGAAATATGAAATACCTCATTTCAGACTTAAAAAGGTGGAGAACATTAAAATATGGCTCTCACTGCGTTCCTACCTGAAGAGACGCGGTCCCCAGCGTTCAGTTGATGTGGTTGTATCTTCGATCTTCTTATTGACACTCTCGATTGCTTTCATTTGTTGTGCCCAGGTTCTCCAAGGACATAAAACTTTCCTGAATGATGCATATAACTGGGAGTTTTTGATCTGGGAAACAGCTTTACTGCTTTTCTTACTACGCCTGGCCTCCCTGGGATCTGAGACCAATAAGAAATACAGCAATGTTTCAATATTACTTACAGAACAGATTAATTTATATCTTAAGATGGAAAAAAAGCCAAATAAGAAAGAACAGCTCACTCTAGTAAACAATGTATTAAAGCTGTCCACCAAGTTGTTAAAAGAGCTGGACACACCATTTAGACTCTATGGACTGACAATGAATCCCTTAATCTACAATATCACAAGAGTAGTTATTCTTTCTGCTGTCTCAGGAGTTATAAGTGATCTTCTAGGATTTAATATAAGACTGTGGAAAATTAAGTCATAA

Related Sequences

XP_004853813.1 Protein

Phtf1 PREDICTED: putative homeodomain transcription factor 1 isoform X1 [Heterocephalus glaber]

Length: 762 aa      View alignments
>XP_004853813.1
MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGRIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVWLLLLYLMQVIAIVLYLMMPLVNVSEVLGPLCLMLLMGTVHCQIVSTQIARPLGNNGNRRRRKLRKTVNGDGSRENGSSNSSDKVRGIETLESASIIGGFWGTLFGNRIKKVKLLSNKGTETDNHSSCLHPIIKKRQCQPYFRMWQTREKGKFSDGEKCHREAYRRLGNGVSDDLSSEEDGEARTQMILLRRSVEGASSDNNCEVNRKSILSRHLNSQVKKTTTRWCHIVRDSDSVAESEFESAAFSQGSRSGMSGGSRSLSLSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPASDRVSAIIWEGSECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSFDQLKSISAEEILTLFCGAPPVISIIILSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKAKKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSIFLLTLSIAFICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS