Details from NCBI annotation

Gene Symbol Csf1
Gene Name colony stimulating factor 1 (macrophage), transcript variant X1
Entrez Gene ID 101709756

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CSF1 ENSCPOG00000003815 (Guinea pig)

Gene Details

colony stimulating factor 1 (macrophage)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019696, Guinea pig)

Protein Percentage 85.04%
CDS Percentage 89.84%
Ka/Ks Ratio 0.4657 (Ka = 0.086, Ks = 0.1847)

CSF1 ENSG00000184371 (Human)

Gene Details

colony stimulating factor 1 (macrophage)

External Links

Gene Match (Ensembl Protein ID: ENSP00000327513, Human)

Protein Percentage 72.94%
CDS Percentage 82.82%
Ka/Ks Ratio 0.51088 (Ka = 0.1648, Ks = 0.3227)

Csf1 ENSMUSG00000014599 (Mouse)

Gene Details

colony stimulating factor 1 (macrophage)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000014743, Mouse)

Protein Percentage 68.32%
CDS Percentage 79.43%
Ka/Ks Ratio 0.56288 (Ka = 0.2114, Ks = 0.3755)

Csf1 ENSRNOG00000018659 (Rat)

Gene Details

colony stimulating factor 1 (macrophage) (Csf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000025221, Rat)

Protein Percentage 65.85%
CDS Percentage 77.17%
Ka/Ks Ratio 0.51068 (Ka = 0.2312, Ks = 0.4527)

Genome Location

Sequence Coding sequence

Length: 1647 bp    Location: 5663405..5681934   Strand: +
>XM_004853660.1
ATGACCACGCGGGGCGCCGCTGGGCGCTGCCCTCCCATGGCATGGCTATGCCCCTGGCTGCTGCTGGTCTTTCTCCTGGTGAGCAGGAGTATTGCTGAGGAGATGTCGGAGCACTGTAGCCACATGATTGGGGATGGACACCTGCAAGTCCTACAGCACCTAATTGACAGTCAGATGGAGACCTCATGCCATATTGCCTTTGAGTTTGCAGATGAGAAACAGTTGAAAGACCCTGTGTGCTACCTTAAGAAGGCATTTCTTCTGGTGAAAAACATAATGGAGGACACCATGCGCTTCAGAGATGAAACCCCCAATGCCAAGGCAATTGGCCAGCTCCAGAGACTCTCTGTGAGACTGAAGAGCTGCTTCACCAAGGATTATGAAAAGCAGGATAAGGCCTGTGTCCGAACTTTCTATGAGACTCCCCTCCAGTTGATGGAAAAGATCAAGAATGTCTTCAATGAAACAAAGAATCTCCTTGAAGAAGACTGGAAGATTTTCACCAAGAACTGCAGTGACAGTTTTGCTAAGTGCTCCATCCCGGATGTGGTGACCAAGCCTGATTGCAACTGCCTGTACCCCAAAGCCACCCCTAGCAGTGACCTGGCTTCTGTCTCCCCTCACCAACCCCTCGCCCCCTCCAAGGTTCCTAAGGCTGGCCTGACCTGGGCTGATTCTGAGGGGACAGAGGGCAGGTCCCTCCTGCCTAGTGAGGACCCCCTTCACACAGTGGACCCAGACAATCCAAAGCATCGACCACCCAGGAGCACCTGCCAGAGCCTCGAATCACCAGAGACCCCAAGCCTCAAGGACAGTCCCACTGGAGATTTACCACAACCTCACCCCTCTGCCGGGACCCCCAGCCTTGGGGTGAAGGACATTCTTGACTCTGGACTGGGCACTAACTGGGCCTTAGAAGAGGCCTCTGGAGAGGCCATTGAGGGTCCTGCACCTCAAGGGGCAGAGTTTTCCCCCTCTAGGCCAGAAGGGGGCAGCATCCAGGCACAACTGCCCATACCCAGCAACCTCCTCTCAGCATCTTCTCCACTCCCAATAACAGAGGACCAACAGCCACCCTTGCCTAAGGTAGACCCTGTGAGATCCACCGACCAGCCCAAGCATGACACTCCTGAGAAGACAGACCATTCATCTCTTCTGCCCACAGAGGGCAAGGAGACAGGCTCTACCCAGACCTCGTCAGTCTGGCCCCAAGGCTTCAGCAATCCCGCCATCCTTTCTGCTCAACCACAGGTTCCTGGAAGCCACTCCTGGGGAAATGTGCTGCCTCTTGGGGAGCTGGAGGGCAAGAGGATCACACGGAACCGGAGGAGCCCTGCAGAGCTGGAAGGAGGACGAGCAAGTGAGGGGGCAGCCAAGCCCCCAGCCCCTTTTAACTCCGTTCCTTTGACTGACACAGGCCATGAGAGGCAGCCTGAGAGAACCTTCAACCCCCAGCTCCCTGGGTTCGTCTTCCACCTGCTGGTGCCCAGCATCATCCTGGTCTTGCTGGCCGTTGGCGGCCTCCTATTCTACAGGAGGAGGCGGAGGAGCCATCAAGAATCTCAGACAGTGGATTCCCTCATAAGGCACCCAGAGGGCAGCTCCCTGACCCAGGATATGGACAGACAGGTGGAATTGCCAGTGTAG

Related Sequences

XP_004853717.1 Protein

Csf1 PREDICTED: macrophage colony-stimulating factor 1 isoform X1 [Heterocephalus glaber]

Length: 548 aa      View alignments
>XP_004853717.1
MTTRGAAGRCPPMAWLCPWLLLVFLLVSRSIAEEMSEHCSHMIGDGHLQVLQHLIDSQMETSCHIAFEFADEKQLKDPVCYLKKAFLLVKNIMEDTMRFRDETPNAKAIGQLQRLSVRLKSCFTKDYEKQDKACVRTFYETPLQLMEKIKNVFNETKNLLEEDWKIFTKNCSDSFAKCSIPDVVTKPDCNCLYPKATPSSDLASVSPHQPLAPSKVPKAGLTWADSEGTEGRSLLPSEDPLHTVDPDNPKHRPPRSTCQSLESPETPSLKDSPTGDLPQPHPSAGTPSLGVKDILDSGLGTNWALEEASGEAIEGPAPQGAEFSPSRPEGGSIQAQLPIPSNLLSASSPLPITEDQQPPLPKVDPVRSTDQPKHDTPEKTDHSSLLPTEGKETGSTQTSSVWPQGFSNPAILSAQPQVPGSHSWGNVLPLGELEGKRITRNRRSPAELEGGRASEGAAKPPAPFNSVPLTDTGHERQPERTFNPQLPGFVFHLLVPSIILVLLAVGGLLFYRRRRRSHQESQTVDSLIRHPEGSSLTQDMDRQVELPV