Details from NCBI annotation

Gene Symbol Sort1
Gene Name sortilin 1, transcript variant X3
Entrez Gene ID 101698000

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SORT1 ENSCPOG00000003184 (Guinea pig)

Gene Details

sortilin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002884, Guinea pig)

Protein Percentage 97.64%
CDS Percentage 95.65%
Ka/Ks Ratio 0.07806 (Ka = 0.0112, Ks = 0.1439)

SORT1 ENSG00000134243 (Human)

Gene Details

sortilin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000256637, Human)

Protein Percentage 93.82%
CDS Percentage 91.92%
Ka/Ks Ratio 0.12045 (Ka = 0.0311, Ks = 0.2582)

Sort1 ENSMUSG00000068747 (Mouse)

Gene Details

sortilin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099692, Mouse)

Protein Percentage 90.88%
CDS Percentage 87.67%
Ka/Ks Ratio 0.10653 (Ka = 0.0479, Ks = 0.4496)

Sort1 ENSRNOG00000031814 (Rat)

Gene Details

sortilin 1 (Sort1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000051102, Rat)

Protein Percentage 90.88%
CDS Percentage 87.35%
Ka/Ks Ratio 0.10225 (Ka = 0.0478, Ks = 0.468)

Genome Location

Sequence Coding sequence

Length: 2490 bp    Location: 5123276..5049045   Strand: -
>XM_004853627.1
ATGGAGCGGCCCCGGGGAGCTGCGGACGGCCTCTCGCGCCGGCCCCACGGCCTCGGCCTCCTCCTCCTCCTCCTCCTCCTGCTGCAGCTCCTGCAGCCGGTGACCCTCGGCCAGGACCGGCTGGACTCGCCCCCGCCGCCCCCGGCTCGGACGTTGCACTGGCCGGGCCCCGTCGGGGTGAGCTGGGGGCCGCGCGCAGACCCGGGCCCGATCCCCCGCGGCGGCCGTTGGCGCCGCAGCGCGCTCGGCGAGGACGAGGACTGCGGCCAGGTCCGGGACTTCGTCGCCAGGCTGGCCAACAACACTCACCAGCATGTGTTTGATGATCTCAGTGGCTCAGTGTCCTTGTCTTGGGTTGGAGATCGCACTGGGGTTATTCTAGTCCTCACTACCTTCCATGTACCACTGGTAATTATGACCTTTGGACAGTCCAAGTTATATCGAAGTGAAGACTATGGAAAAAACTTTAAGGATATTACAAATCTCATCAATAACACCTTCATTCGTACTGAATTTGGCATTGCTATTGGTCCCGAAAATTCTGGAAAGGTGATATTAACGGCAGAGGTATCTGGAGGAAGTCATGGAGGAAGAATCTTCAGGTCATCAGATTTTGCAAAGAATTTTGTACAGACAGATCTCCCTTTTCATCCTCTGACTCAAATGATGTATAGCCCTCAGAATTCTGATTACCTTTTAGCCCTCAGCACTGAAAATGGCCTGTGGGTGTCCAAGAATTTTGGGGGAAAATGGGAAGAAATCCACAAAGCAGTATGTTTGGCCAAATGGGGATCAGAAAATACCATCTTCTTTACCACCTATGTGAATGGCTCCTGCACTGACCTTGGAGCACTGGAATTATGGAGAACTGCAGACTTAGGGAAAACCTTCAAAACCATTGGTGTGAAAATCTACTCATTTGGTCTTGGAGGACGTTTCCTTTTTGCCTCTGTGATGGCTGATAAGGATACAACAAGAAGGATCCACGTGTCAACAGATCAAGGGGACACGTGGAGCATGGCCCAACTTCCTTCTGTGGGACAGGAACAATTCTATTCTATTCTGGCAGCTAATGATGACATGGTATTCATGCATGTAGATGAACCTGGAGATACTGGATTTGGCACAATCTTTACCTCTGATGATCGAGGCATTGTCTATTCCAAATCTTTGGACCGACATCTCTATACTACCACAGGTGGAGAAACAGACTTTACCAATGTAACCTCCCTCCGTGGAGTCTACATAACAAGCATGCTCTCAGAAGATAATTCTATCCAGACAATGATCACTTTTGACCAAGGAGGAAGGTGGAAGCACCTGCGGAAGCCTGAAAACAGCGAGTGCGATGCTACTGCCAAAAATAAGAATGAGTGCAGCCTTCATATTCATGCTTCCTACAGCATCTCCCAGAAACTAAATGTGCCAATGGCACCACTCTCTGAGCCTAATGCTGTGGGCATAGTCATCGCTCATGGTAGTGTGGGGGATGCCATCTCAGTGATGGTCCCAGATGTTTACATCTCAGATGATGGGGGTTACTCCTGGATGAAGATGCTGGAAGGACCCCACTATTACACCATCCTGGATTCCGGAGGCATCATTGTGGCCATTGAGCACAGCAGCCATCCTATCAATGTGATTAAGTTCTCCACAGATGAAGGTCAGTGCTGGCAAATCTACACGTTCACAAGAGAACCCATTTACTTCACTGGCCTAGCTTCAGAGCCTGGAGCCAGATCCATGAATATCAGCATTTGGGGCTTCACAGAATCTTTCCTAACCCGCCAATGGGTCTCCTACACCATTGATTTTAAAGATATCCTTGAAAGGAACTGTGAAGAGAGGGACTATACCATATGGCTGGCACACTCCACAGACCCTGGAGATTATGAAGATGGCTGCATTCTGGGCTATCGGGAACAGTACCTACGGCTACGGAAGTCATCTGTCTGTCAGAATGGTCGAGACTATGTTGTGACCAAGCAGCCGTCCATCTGTCCCTGTTCCCTGGAGGACTTTCTCTGTGATTTTGGCTACTTTCGTCCAGAGAATGACTCAAAGTGTGTGGAACAGCCAGAACTGAAGGGGCATGACCTAGAGTTTTGTCTGTATGGACGAGAAGAACACCTGACGACAAACGGGTACCGGAAAATTCCAGGAGACAAATGCCAAGGTGGGGTGAATCCAGCTCGAGAAGTAAAAGACTTGAAAAAGAAATGCACAAGCAATTTTTTGAGTCCCAAAATGCAGAATTCCAAGTCAAATTCTGTTCCAATTATCCTGGCCATCGTGGGATTGATGCTGGTCACAGTTGTAGCAGGGGTGCTCATCGTGAAGAAATATGTCTGTGGTGGAAGGTTCCTGGTGCATCGATATTCTGTGCTACAGCAGCATGCAGAAGCCGATGGTGTGGACACTCTGGACACAGCCTCCCATGCTAATAAGAGTGGTTATCATGATGACTCAGATGAGGACCTCCTGGAATAG

Related Sequences

XP_004853684.1 Protein

Sort1 PREDICTED: sortilin isoform X3 [Heterocephalus glaber]

Length: 829 aa      View alignments
>XP_004853684.1
MERPRGAADGLSRRPHGLGLLLLLLLLLQLLQPVTLGQDRLDSPPPPPARTLHWPGPVGVSWGPRADPGPIPRGGRWRRSALGEDEDCGQVRDFVARLANNTHQHVFDDLSGSVSLSWVGDRTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGIAIGPENSGKVILTAEVSGGSHGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSENTIFFTTYVNGSCTDLGALELWRTADLGKTFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSMLSEDNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWMKMLEGPHYYTILDSGGIIVAIEHSSHPINVIKFSTDEGQCWQIYTFTREPIYFTGLASEPGARSMNISIWGFTESFLTRQWVSYTIDFKDILERNCEERDYTIWLAHSTDPGDYEDGCILGYREQYLRLRKSSVCQNGRDYVVTKQPSICPCSLEDFLCDFGYFRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPAREVKDLKKKCTSNFLSPKMQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEADGVDTLDTASHANKSGYHDDSDEDLLE