Details from NCBI annotation

Gene Symbol Prpf38b
Gene Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing B, transcript variant X1
Entrez Gene ID 101720097

Database interlinks

Part of NW_004624772.1 (Scaffold)

For more information consult the page for NW_004624772.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF38B ENSCPOG00000004571 (Guinea pig)

Gene Details

pre-mRNA processing factor 38B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004121, Guinea pig)

Protein Percentage 98.16%
CDS Percentage 96.32%
Ka/Ks Ratio 0.05371 (Ka = 0.008, Ks = 0.1491)

PRPF38B ENSG00000134186 (Human)

Gene Details

pre-mRNA processing factor 38B

External Links

Gene Match (Ensembl Protein ID: ENSP00000359042, Human)

Protein Percentage 97.99%
CDS Percentage 94.38%
Ka/Ks Ratio 0.03046 (Ka = 0.0086, Ks = 0.2823)

Prpf38b ENSMUSG00000027881 (Mouse)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029480, Mouse)

Protein Percentage 93.17%
CDS Percentage 87.95%
Ka/Ks Ratio 0.0624 (Ka = 0.0349, Ks = 0.5588)

Prpf38b ENSRNOG00000020438 (Rat)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (Prpf38b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027738, Rat)

Protein Percentage 94.1%
CDS Percentage 88.5%
Ka/Ks Ratio 0.04962 (Ka = 0.0277, Ks = 0.5585)

Genome Location

Sequence Coding sequence

Length: 1647 bp    Location: 4480464..4490017   Strand: +
>XM_004853601.1
ATGGCTAACAACAGCCCGGCGCTGACAGGCAATTCGCAGCCGCAGCACCAGGCAGCCGCGGCCGCGGCCCAGCAACAGCAGCAGCAGCAGTGCGGCGGCGGGGGCGCCACCAAGCCGGCGGTCTCGGGCAAGCAGGGCAATGTGCTGCCGCTATGGGGCAACGAGAAGACCATGAACCTCAACCCCATGATCCTGACCAACATCCTGTCCTCGCCTTACTTCAAAGTGCAGCTGTACGAGCTCAAGACCTACCACGAGGTGGTGGACGAGATCTACTTTAAGGTCACACATGTTGAGCCATGGGAGAAAGGAAGCAGAAAAACAGCTGGCCAGACAGGGATGTGCGGAGGGGTTCGAGGTGTTGGAACAGGAGGAATTGTTTCTACTGCTTTTTGCCTATTATACAAATTATTTACTCTGAAGTTAACTCGTAAGCAAGTAATGGGTCTTATAACACACACAGACTCTCCATATATTAGAGCCCTTGGATTTATGTATATAAGGTATACACAGCCCCCTACCGATCTGTGGGACTGGTTTGAATCCTTCCTTGATGATGAAGAGGACCTAGATGTGAAGGCTGGTGGAGGCTGTGTAATGACAATTGGAGAAATGCTACGGTCTTTTCTCACAAAACTGGAGTGGTTTTCTACCTTGTTCCCAAGAATTCCAGTTCCAGTTCAGAAGAATATTGATCAACAGATTAAAAGTCGACCTAGGAAAATCAAGAAAGATGGGAAAGAAGGTGCTGAGGAAATAGAAAGACATGTTGAACGAAGACGTTCAAGATCTCCCAGGAGATCGCTGAGTCCACGGAGGTCCCCAAGAAGATCAAGAAGTAGAAGTCATCATCGAGAGGGCCATGGGTCTTCTAGTTTTGACAGAGAATTAGAAAGAGAGAAAGAACGTCAACGACTAGAGCGTGAAGCCAAAGAAAGAGAGAAAGAAAGGCGGAGATCCCGAAGTATTGATCGTGGGTTAGATCGCAGGCATAGCAGGAGTAGGGAAAGGCATAGAAGTCGCAGTCGAAGTCGTGATAGAAAAGGGGATAGAAGGGACAGGGATCGGGAAAGAGAGAAAGAAAATGAGAGAGGTAGAAGACGAGATCGAGACTATGATAAGGAAAGAGGTAATGACCGAGACAAGGAGAGAGAACGATCCAGAGAACGATCCAAGGAACAGAGAAGTCGGGGTGAGATAGAAGAGAAGAAACATAAAGAAGACAAAGATGATAGGAGGCATAGAGATGACAAAAAAGATTCCAAAAAAGAGAAAAAACACAGTAGAAGTAGAAGCAGAGAAAGGAAACATAGAAGTAGAAGCAGAAGTAGAAATGCAGGGAAACGAAGTAGAAGCAGGAGCAAAGAGAAATCAAGTAAACACAAAAATGAAAGTAAAGAAAAATCAAATAAACGAAGTAGAAGTGGCAGTCAAGGAAGAACTGACAGTGTTGAAAAATCCAAAAAACGGGAACATAGCCCCAACAAAGAAAAATCTAGAAAGCGTAGCAGAAGCAAAGAACGATCCCACAAACGCGATCACAGTGATAGTAAGGACCAGTCAGACAAACATGATCGACGGAGGAGCCAAAGTATAGACCGAGAGAGCCAAGAAAAACAGCATAAAAACAAAGATGAGACTGTGTGA

Related Sequences

XP_004853658.1 Protein

Prpf38b PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Heterocephalus glaber]

Length: 548 aa      View alignments
>XP_004853658.1
MANNSPALTGNSQPQHQAAAAAAQQQQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKSRPRKIKKDGKEGAEEIERHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLDRRHSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNDRDKERERSRERSKEQRSRGEIEEKKHKEDKDDRRHRDDKKDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPNKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIDRESQEKQHKNKDETV