Sequence details NCBI ID: XM_004853499.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hnrnpu
Gene Name heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), transcript variant X2
Entrez Gene ID 101726650

Database interlinks

Part of NW_004624771.1 (Scaffold)

For more information consult the page for NW_004624771.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HNRNPU ENSCPOG00000011887 (Guinea pig)

Gene Details

heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010693, Guinea pig)

Protein Percentage 99.38%
CDS Percentage 95.81%
Ka/Ks Ratio 0.01594 (Ka = 0.0028, Ks = 0.177)

HNRNPU ENSG00000153187 (Human)

Gene Details

heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)

External Links

Gene Match (Ensembl Protein ID: ENSP00000283179, Human)

Protein Percentage 98.13%
CDS Percentage 93.57%
Ka/Ks Ratio 0.02854 (Ka = 0.0084, Ks = 0.2941)

Hnrnpu ENSMUSG00000039630 (Mouse)

Gene Details

heterogeneous nuclear ribonucleoprotein U

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047571, Mouse)

Protein Percentage 97.37%
CDS Percentage 91.45%
Ka/Ks Ratio 0.0296 (Ka = 0.012, Ks = 0.4056)

Hnrnpu ENSRNOG00000033790 (Rat)

Gene Details

heterogeneous nuclear ribonucleoprotein U (Hnrnpu), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000046783, Rat)

Protein Percentage 97.12%
CDS Percentage 91.65%
Ka/Ks Ratio 0.03462 (Ka = 0.0132, Ks = 0.3816)

Genome Location

Sequence Coding sequence

Length: 2412 bp    Location: 14756100..14765832   Strand: +
Raw sequence   
>XM_004853499.1
ATGAGTTCCTCGCCTGTTAATGTAAAAAAGCTGAAGGTGTCGGAGCTGAAAGAGGAGCTCAAGAAGCGACGCCTGTCCGATAAAGGCCTCAAGGCGGAGCTCATGGATCGGCTCCAGGCCGCGCTGGACGACGAGGAAGCCGGGGGCCGCCCCGCCTTGGAGCCCGGGAACGGCAGCCTCGACCTGGGCGGGGATTCCGCCGGGCGCTCGGGTGCAGGCCTCGAACAGGAGGCCGCGGCCGGCGGCGACGAGGAGGAGGAAGAGGAGGAGGAAGGGATCGCCGCGCTGGACGGCGACCAGATGGAGCTAGGGGAAGAGAACGGGGCCGCGGGGGCGGCCGACGCGGGCCCGATGGAAGAGGAGGAGGCCGCGTCGGAGGACGAAAACGGCGACGATCAGGGCTTCCAGGAAGGGGAGGACGAGCTCGGCGAGGAGGAGGAGGGCGCGGGCGACGAGAACGGGCACGGGGAGCAGCAGGCTCAACCGCCGGCGACGCCGCAGCCCCAGCCCCCCCAGCAGCGCGGGGCCGCCAAGGAGGCCGCGGCGAAGAGCGGCGGCCCCACCTCGCTCTTCGCGGTGACCGTGGCTCCGCCCGGGGCGAGGCAGGGCCAGCAGCAGGCGGGAGGAGATGGCAAAACAGAGCAGAAAGGCGGAGATAAAAAGAGAGGTGTTAAGAGACCTCGAGAAGATCATGGCCGAGGATATTTTGAGTACATCGAAGAAAACAAGTACAGCAGAGCCAAATCTCCTCAGCCACCTGTTGAAGAAGAAGATGAGCACTTCGATGACACAGTGGTTTGTCTTGATACTTATAATTGTGATCTACATTTTAAAATATCAAGAGATCGCCTCAGTGCTTCTTCCCTTACTATGGAGAGCTTTGCTTTTCTTTGGGCTGGAGGAAGGGCCTCTTATGGTGTGTCAAAAGGCAAAGTCTGTTTTGAGATGAAGGTTACAGAGAAGATCCCTGTTAGGCATTTATATACAAAAGATATTGACATACATGAAGTTCGCATTGGATGGTCCCTAACCACAAGTGGAATGTTGCTCGGTGAAGAAGAATTTTCTTATGGATATTCTCTAAAAGGAATAAAAACGTGCAACTGTGAGACAGAAGATTATGGAGAAAAGTTTGATGAAAATGATGTGATTACTTGTTTTGCTAACTTTGAAAGTGATGAAGTAGAACTTTCCTATGCTAAGAATGGACAAGATCTTGGTGTTGCCTTCAAAATTAGTAAGGAAATTCTTGCTGGGCGGCCACTCTTCCCACATGTTCTCTGCCACAACTGTGCAGTCGAATTTAATTTTGGTCAGAAGGAAAAGCCATATTTTCCAATACCTGAAGACTATACTTTTATCCAAAATGTCCCCTTAGAGGATCGAGTAAGAGGACCAAAGGGGCCTGAAGAAAAGAAAGATTGTGAAGTTGTGATGATGATTGGCTTGCCAGGAGCTGGAAAAACTACTTGGGTTACTAAACATGCAGCTGAAAATCCTGGCAAATACAACATTCTTGGAACAAATACTATTATGGACAAAATGATGGTGGCAGGTTTTAAGAAGCAAATGGCAGATACTGGAAAGCTGAACACACTGTTGCAGCGAGCCCCACAGTGTCTTGGAAAGTTCATTGAGATTGCTGCCCGTAAGAAGCGAAATTTCATTCTGGATCAGACCAATGTGTCAGCTGCTGCCCAGAGAAGAAAAATGTGCCTGTTTGCAGGCTTCCAGCGAAAAGCTGTGGTAGTTTGCCCAAAAGATGAGGACTATAAACAGAGAACACAAAAGAAAGCAGAAGTAGAGGGGAAAGACCTGCCAGAACATGCAGTCCTAAAAATGAAAGGAAACTTTACACTGCCAGAAGTGGCCGAGTGCTTTGATGAAATAACCTATGTTGAACTCCAGAAGGAAGAAGCCCAAAAACTTTTGGAGCAATATAAGGAAGAAAGCAAAAAAGCACTTCCACCAGAAAAGAAGCAGAATACTGGCTCAAAGAAGAGCAATAAAAATAAGAGTGGCAAAAACCAGTTTAACAGAGGTGGCGGCCATAGAGGACGTGGAGGATTCAATATGCGAGGTGGAAACTTCAGAGGAGGAGCTCCTGGTAACCGTGGTGGATATAATAGGAGGGGCAATATGCCTCAGAGAGGTGGTGGCGGTGGTGGGAGTGGTGGAATTGGTTATCCATACCCTCGTGGCCCTGTTTTTCCTGGCCGAGGTGGCTATTCAAACAGAGGGAACTACAACAGAGGTGGAATGCCTAACAGAGGGAACTATAACCAGAACTTTAGAGGACGAGGAAACAATCGTGGCTACAAAAATCAATCTCAGGGCTACAACCAGTGGCAGCAGGGTCAATTCTGGGGTCAGAAGCCATGGAGTCAGCATTATCACCAAGGATATTATTGA

Related Sequences

XP_004853556.1 Protein

Hnrnpu PREDICTED: heterogeneous nuclear ribonucleoprotein U isoform X2 [Heterocephalus glaber]

Length: 803 aa      View alignments
>XP_004853556.1
MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMDRLQAALDDEEAGGRPALEPGNGSLDLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEGIAALDGDQMELGEENGAAGAADAGPMEEEEAASEDENGDDQGFQEGEDELGEEEEGAGDENGHGEQQAQPPATPQPQPPQQRGAAKEAAAKSGGPTSLFAVTVAPPGARQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKEILAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEDYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRGPVFPGRGGYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY