Sequence details NCBI ID: XM_004853307.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101714530

Database interlinks

Part of NW_004624770.1 (Scaffold)

For more information consult the page for NW_004624770.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LPIN2 ENSCPOG00000023844 (Guinea pig)

Gene Details

lipin 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018648, Guinea pig)

Protein Percentage 79.36%
CDS Percentage 79.89%
Ka/Ks Ratio 0.17445 (Ka = 0.1422, Ks = 0.8153)

LPIN2 ENSG00000101577 (Human)

Gene Details

lipin 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000261596, Human)

Protein Percentage 85.58%
CDS Percentage 80.57%
Ka/Ks Ratio 0.08004 (Ka = 0.0833, Ks = 1.0408)

Lpin2 ENSMUSG00000024052 (Mouse)

Gene Details

lipin 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000118610, Mouse)

Protein Percentage 82.07%
CDS Percentage 77.61%
Ka/Ks Ratio 0.09438 (Ka = 0.1162, Ks = 1.2307)

Lpin2 ENSRNOG00000014876 (Rat)

Gene Details

lipin 2 (Lpin2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020476, Rat)

Protein Percentage 85.47%
CDS Percentage 79.06%
Ka/Ks Ratio 0.07009 (Ka = 0.0886, Ks = 1.2635)

Genome Location

Sequence Coding sequence

Length: 2580 bp    Location: 13203742..13158111   Strand: -
Raw sequence   
>XM_004853307.1
ATGGGAGTGAAGACGGGGAGGAGGCTCCCGAGAGCCCCGTCAGTGAGCGTAGAGGCATTTACCGTGGCAAGGCCCCCCCGGGGCTCCTGTNCTCAGACCATGAATTACGTGGGCCAGCTGGCCGGGCAGGTGCTCGTCACCGTGAAGGAGCTGTACAAGGGCATCAACCAGGCCACCCTGTCGGGCTGCATCGATGTGGTGGTGGTGCGGCAGCAGGATGGCACCTACCAGTGCTCGCCCTTCCACGTGCGCTTTGGAAAGCTGGGCGTCCTGCGCTCCAAGGAGAAAGTGATTGACATAGAAATCAATGGCAGCGCGGTGGATCTTCACATGAAATTGGGTGACAATGGAGAAGCCTTCTTCGTGGAGGAGACGGAAGAGGAATATGAAAAGCTGCCTGCTTACCTGGCCACCTCCCCAATTCCCACGGAAGACCAGTTCTTTAAGGATATTGATGCCCCTGTGGGGAAATCAGGAGGAGACGCAAGACCGCCCCAGAGTCCAGGCGTCTCGCACGTCCTGGAAATGGAGACAGTGTTTGCTCCAAGTGCTGTGAAAAAGAAAAAGCGGAGGAGGAAGAAGTGCAAGCAGGAGGTCAAGAAGGAGGAGCCGGCGGCCTCGCCTACTGCAGAGGGTGCGCGCGATGTGCCTGTGAGCTCCGACGACGAGCAGGCGGCCCAGGCGGCCAGAGGACCTTCAAGTGCTTCCTTGAAGGAAGAAGAATATAAGGAACCTTTGCTCTTCCGTTCTGGGGATCACTACCCCTTATCTGATGGAGATTGGTCCCCGCTAGAGAATGCCTACCCCCAGGCAGTGTGTCCTAAGAGCGATTCAGAGCTGGAAGTGAAGCCCTCCGAGAGCCTGCTGCGGTCAGAGTCGCACATGGAGTGGACGTGGGGCGGCTTTCCGGAGTCCACCAAGGTCAGCAAAAGAGAAAGGGCCGACCATCACCCTCGGATGGCCACCATCACCCCGTCTGAAAACACTCACTTCCGGGTCATCCCGAGCGAGGACAGCCTGCTGCGCGGCGAGGCCGAGGAGGGCCCAGTGCTGGCCATCGTGAGGCCCACGCCCAGGGCCCCGTGTGCACTGAGGAACGAGGAGACCGCAGGCCCGGAGCCCCCAGCCGAGCCCCCCGAGCCCCGGCCCTCGGCGGCCAAGGCGGACTCGCCGTCCCGGAGGAGAGGTGTCCACAAGAGAAGCCAGCACCAGGGGCCCGATGACATCTACCTGGATGACTTGAAGGGGCTGGAGCCCGAGGTGGCTGCCCTCTACTTCCCCAAGAGTGATGCAGACCCCGGCTCTAGGCAGTGGCCCGAGTCCGACACGCTGTCCGGCTCCCAGTCCCCGCAGTCGGTGGGCAGCGCGGCCGCGGACAGCGGTACCGAGTGCCTCTCGGACTCTGCCATGGACCTGCCCGACGTCACCCTGTCCCTCTGCGGAGGCCTCAGCGACAACGGGGAGATTTCCAAAGGTAGGCGGGCGGATGATATCATTACCTATCAAGAGTTTGCGGAAAACCCTGGACTTATAGACAACCCTAACCTCGTCATACGGATTTATAACCGTTACTATAACTGGGCATTGGCTGCTCCCATGATCCTCAGCCTACAGGTTTTCCAGAAGAGTCTGCCAAAGGCCACCGTGGAGTCCTGGGTCAAGGACAAGATGCCAAAGAAGTCTGGGCGCTGGTGGTTTTGGCGGAAGCGGGAAAGCATGACCAAGCAGGTAACAGGCCGAGGCAGCCGGGCCCACCAACTAAGAATGGTGACTCCTTCGTGTACTGCAAACCTCTTGCCGAGCCCTCGCTCGGGCTCGCAGCTGTGCGCAAAACTGCAGCTGCACGATGGCCCCAATGACATCGTGTTCAGTATCACAACCCAGTACCAAGGCACATGCCGCTGCGCGGGGACCATTTACCTGTGGGACTGGAACGACAAGATCGTCATTTCTGACATCGATGGGACCATCACCAAGTCTGACGCTTTGGGCCAGATTCTCCCGCAGCTGGGTAAAGACTGGACGCACCAGGGCATCGCAAAGCTGTACCACTCCATCAACGAGAACGGCTACAAGTTCCTGTACTGCTCGGCCCGCGCCATCGGCATGGCCGACATGACCCGCGGCTACCTGCACTGGGTCAACGACAAGGGCACCATCCTGCCACGGGGCCCCCTCATGCTGTCGCCCAGCAGCCTGTTCTCCGCCTTCCACAGGGAAGTGATAGAAAAGAAACCAGAGAAGTTCAAAATCGAGTGTCTGAATGACATCAAGAACCTGTTTGCCCCGGCCAAGCAGCCCTTCTATGCTGCCTTTGGAAACCGGCCCAACGACGTCTACGCTTATACACAGGTCGGAGTCCCCGACTGCAGGATCTTCACCGTGAACCCCAAGGGGGAGCTGATCCAGGAGAGGACCAAGGGGAACAAATCATCGTACCACAGGCTCAGCGAGCTGGTGGAGCATGTGTTCCCGCTGCTCAGCAAGGAGCAGAACTCCGCCTTCCCGTGCCCCGAGTTCAGCTCCTTCTGCTACTGGAGGGACCCCATCCCCGCTGCGGACCTGGACGCCCTGGCCTGA

Related Sequences

XP_004853364.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: phosphatidate phosphatase LPIN2 [Heterocephalus glaber]

Length: 859 aa      View alignments
>XP_004853364.1
MGVKTGRRLPRAPSVSVEAFTVARPPRGSCXQTMNYVGQLAGQVLVTVKELYKGINQATLSGCIDVVVVRQQDGTYQCSPFHVRFGKLGVLRSKEKVIDIEINGSAVDLHMKLGDNGEAFFVEETEEEYEKLPAYLATSPIPTEDQFFKDIDAPVGKSGGDARPPQSPGVSHVLEMETVFAPSAVKKKKRRRKKCKQEVKKEEPAASPTAEGARDVPVSSDDEQAAQAARGPSSASLKEEEYKEPLLFRSGDHYPLSDGDWSPLENAYPQAVCPKSDSELEVKPSESLLRSESHMEWTWGGFPESTKVSKRERADHHPRMATITPSENTHFRVIPSEDSLLRGEAEEGPVLAIVRPTPRAPCALRNEETAGPEPPAEPPEPRPSAAKADSPSRRRGVHKRSQHQGPDDIYLDDLKGLEPEVAALYFPKSDADPGSRQWPESDTLSGSQSPQSVGSAAADSGTECLSDSAMDLPDVTLSLCGGLSDNGEISKGRRADDIITYQEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVKDKMPKKSGRWWFWRKRESMTKQVTGRGSRAHQLRMVTPSCTANLLPSPRSGSQLCAKLQLHDGPNDIVFSITTQYQGTCRCAGTIYLWDWNDKIVISDIDGTITKSDALGQILPQLGKDWTHQGIAKLYHSINENGYKFLYCSARAIGMADMTRGYLHWVNDKGTILPRGPLMLSPSSLFSAFHREVIEKKPEKFKIECLNDIKNLFAPAKQPFYAAFGNRPNDVYAYTQVGVPDCRIFTVNPKGELIQERTKGNKSSYHRLSELVEHVFPLLSKEQNSAFPCPEFSSFCYWRDPIPAADLDALA