Details from NCBI annotation

Gene Symbol Pdlim3
Gene Name PDZ and LIM domain 3, transcript variant X3
Entrez Gene ID 101711555

Database interlinks

Part of NW_004624769.1 (Scaffold)

For more information consult the page for NW_004624769.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDLIM3 ENSCPOG00000004470 (Guinea pig)

Gene Details

PDZ and LIM domain 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004033, Guinea pig)

Protein Percentage 97.15%
CDS Percentage 91.67%
Ka/Ks Ratio 0.0477 (Ka = 0.0152, Ks = 0.3194)

PDLIM3 ENSG00000154553 (Human)

Gene Details

PDZ and LIM domain 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000284770, Human)

Protein Percentage 81.65%
CDS Percentage 79.85%
Ka/Ks Ratio 0.18369 (Ka = 0.1283, Ks = 0.6986)

Pdlim3 ENSMUSG00000031636 (Mouse)

Gene Details

PDZ and LIM domain 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034053, Mouse)

Protein Percentage 95.57%
CDS Percentage 87.97%
Ka/Ks Ratio 0.04336 (Ka = 0.0232, Ks = 0.5359)

Pdlim3 ENSRNOG00000012658 (Rat)

Gene Details

PDZ and LIM domain 3 (Pdlim3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017054, Rat)

Protein Percentage 83.54%
CDS Percentage 79.01%
Ka/Ks Ratio 0.14187 (Ka = 0.1201, Ks = 0.8465)

Genome Location

Sequence Coding sequence

Length: 951 bp    Location: 16374105..16343554   Strand: -
>XM_004853030.1
ATGCCCCAGAACGTGGTCCTCCCGGGCCCTGCACCCTGGGGCTTCAGACTCTCGGGGGGCATAGACTTCAACCAGCCTTTGGTCATCACCAGGATCACTCCAGGAAGCAAGGCGGCAGCTGCCAACCTGTGTCCTGGCGATGTCATCCTGGCTATTGATGGCTTTGGTACAGAGTCCATGACGCACGCTGATGCACAGGATAGGATTAAAGCAGCAGCACACCAGTTGTGTCTCAAAATTGACAGGGCAGAAACTCGCTTATGGTCTCCACAGGTATCTGAAGATGGGAAAGCTCATCCTTTCAAAATCAACTTAGAATCAGAGCCTCAGGAATTCAAACCCATTGGTATCGCACACAACAGAAGGGCCCAGCCTTTTGTTGCAGCAGCAAACATTGATGACAAAAGACAGGTAGTGAGCGCTTCCTATAACTCACCAATTGGGCTCTATTCAACTAGCAATATCCAAGATGCACTTCACGGACAGCTGCGGGGTCTCATTCCTAGCTCACCTCAAAATGAGCCCATGGCCTCAGTACCACCCCAGTCAGATGTGTACCGGATGCTCCATGACAATCGCGATGAACCTGCTCAGCCTCGCCAGTCAGGCTCTTTCAGGGTGCTCCAGGAGCTAGTGAACGATGGTTCAGATGACCGCCCTGCTGGGACTCGCAGTGTGAGGGCACCAGTTACTAAAGTCCATGGCGGAGCTGGAGGCGCTCAGAGGATGCCACTCTGTGACAAGTGTGGAAATGGCATCGTTGGCGCCGTTGTGAAGGCACGAGATAAGTACCGGCATCCCGAGTGCTTCGTGTGTGCTGACTGTAACCTCAACCTCAAGCAAAAGGGCTACTTCTTCGTGGAGGGGGAGCTGTACTGTGAAGCTCATGCGAGAGCCCGCACGAGGCCCCCAGAGGGCTATGACACAGTCACCCTGTATCCCAAAGCTTAG

Related Sequences

XP_004853087.1 Protein

Pdlim3 PREDICTED: PDZ and LIM domain protein 3 isoform X3 [Heterocephalus glaber]

Length: 316 aa      View alignments
>XP_004853087.1
MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAAAHQLCLKIDRAETRLWSPQVSEDGKAHPFKINLESEPQEFKPIGIAHNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPMASVPPQSDVYRMLHDNRDEPAQPRQSGSFRVLQELVNDGSDDRPAGTRSVRAPVTKVHGGAGGAQRMPLCDKCGNGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCEAHARARTRPPEGYDTVTLYPKA