Sequence details NCBI ID: XM_004852922.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Clcn3
Gene Name chloride channel, voltage-sensitive 3, transcript variant X1
Entrez Gene ID 101704112

Database interlinks

Part of NW_004624769.1 (Scaffold)

For more information consult the page for NW_004624769.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLCN3 ENSCPOG00000000904 (Guinea pig)

Gene Details

Cavia porcellus chloride channel 3 (Clcn3), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000815, Guinea pig)

Protein Percentage 99.54%
CDS Percentage 96.26%
Ka/Ks Ratio 0.01771 (Ka = 0.0027, Ks = 0.1511)

CLCN3 ENSG00000109572 (Human)

Gene Details

chloride channel, voltage-sensitive 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000261514, Human)

Protein Percentage 99.08%
CDS Percentage 94.88%
Ka/Ks Ratio 0.02025 (Ka = 0.0043, Ks = 0.2122)

Clcn3 ENSMUSG00000004319 (Mouse)

Gene Details

chloride channel 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000004430, Mouse)

Protein Percentage 98.85%
CDS Percentage 92.19%
Ka/Ks Ratio 0.01494 (Ka = 0.0054, Ks = 0.36)

Clcn3 ENSRNOG00000010682 (Rat)

Gene Details

chloride channel, voltage-sensitive 3 (Clcn3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045523, Rat)

Protein Percentage 97.31%
CDS Percentage 90.02%
Ka/Ks Ratio 0.04117 (Ka = 0.0181, Ks = 0.4406)

Genome Location

Sequence Coding sequence

Length: 2601 bp    Location: 1156532..1232612   Strand: +
Raw sequence   
>XM_004852922.1
ATGGAGTCTGAGCAGCTGTTCCATAGAGGCTACTATAGAAACAGCTACAACAGTATAACAAGTGCAAGTAGTGATGAGGAACTTTTAGATGGAGCAGGTGTTATTATGGACTTTCAGACTTCTGAAGATGATAATTTGTTAGATGGTGACACAGCAGTTGGAACTCATTATACAATGACAAATGGAGGCAGCATTAATAGTTCTACACACCTACTGGATCTTTTGGATGAACCAATTCCAGGTGTTGGTACATACGATGATTTCCATACTATTGATTGGGTGCGAGAGAAGTGTAAAGATAGAGAACGGCATAGACGGATCAACAGCAAAAAGAAAGAATCAGCATGGGAAATGACAAAAAGTTTGTATGACTCATGGTCGGGATGGCTAGTAGTAACACTGACAGGGCTGGCATCAGGAGCACTGGCTGGATTAATAGACATTGCTGCTGACTGGATGACTGACCTAAAGGAAGGAATTTGCCTTAGTGCATTATGGTACAACCATGAACAGTGCTGTTGGGGATCTAATGAAACCACATTTGAAGAGAGGGATAAATGTCCACAGTGGAAAACATGGGCAGAGTTAATCATAGGTCAAGCGGAGGGTCCTGGTTCTTACATCATGAATTATATAATGTATATCTTCTGGGCCTTGAGTTTTGCCTTCCTTGCGGTTTCCCTGGTAAAGGTATTTGCCCCATATGCCTGTGGCTCTGGAATTCCAGAGATTAAAACTATTTTGAGTGGATTCATCATCAGAGGTTACTTGGGAAAATGGACTTTAATGATTAAAACCATCACTTTAGTACTTGCTGTGGCATCAGGTTTGAGTTTAGGAAAAGAAGGTCCCCTGGTACATGTTGCCTGTTGCTGTGGAAATATCTTTTCCTACCTCTTTCCCAAGTATAGCACAAATGAAGCTAAAAAAAGGGAGGTGCTATCGGCCGCCTCAGCTGCAGGTGTTTCTGTGGCTTTTGGTGCACCGATTGGAGGAGTTCTTTTTAGCCTGGAGGAGGTTAGCTATTATTTTCCACTTAAAACTTTATGGAGATCATTTTTTGCTGCTTTAGTGGCTGCATTTGTTTTGAGATCCATCAATCCATTTGGGAACAGCCGTCTGGTCCTTTTTTATGTGGAGTATCATACACCATGGTACCTTTTTGAACTGTTTCCTTTTATTCTCCTTGGGGTATTTGGAGGGCTCTGGGGAGCCTTTTTCATTAGGGCAAATATTGCCTGGTGTCGACGACGTAAATCCACCAAATTTGGAAAATATCCTGTTCTTGAAGTCATTATTGTTGCAGCCATTACTGCTGTGATAGCCTTCCCTAATCCATATACGAGGCTCAACACCAGTGAACTGATTAAAGAGCTTTTTACAGACTGTGGTCCCCTGGAATCCTCTTCTCTCTGTGACTACAGAAATGACATGAATGCCAGTAAAATTGTTGATGATATTCCTGATCGTCCAGCAGGCGTTGGAGTGTATTCAGCTATATGGCAGTTATGCTTAGCACTCATATTTAAAATCATAATGACCGTATTCACTTTTGGCATCAAGGTTCCATCAGGCTTGTTCATCCCCAGCATGGCCATTGGAGCGATTGCAGGAAGGATTGTGGGGATTGCAGTAGAACAACTTGCCTACTATCACCATGACTGGTTTATCTTTAAGGAGTGGTGTGAGGTCGGAGCTGATTGCATTACACCTGGCCTTTATGCCATGGTTGGTGCTGCTGCGTGCTTAGGTGGTGTGACAAGGATGACTGTCTCCCTGGTGGTCATTGTTTTTGAGCTTACTGGAGGCTTGGAATATATTGTTCCTCTTATGGCTGCAGTAATGACCAGTAAATGGGTTGGCGATGCCTTTGGTAGAGAAGGCATCTATGAAGCACACATCCGTTTAAATGGATACCCTTTCTTGGATGCAAAAGAAGAATTCACTCATACCACCCTGGCAGCTGATGTCATGAGACCTCGGAGGAATGATCCTCCCTTAGCTGTCTTGACACAGGACAACATGACAGTGGATGACATAGAAAACATGATTAATGAAACCAGTTACAATGGCTTTCCTGTCATAATGTCAAAAGAATCTCAGAGATTAGTGGGATTTGCCCTCAGAAGAGACTTGACAATTGCAATAGAAAGTGCCAGAAAAAAGCAAGAAGGTATTGTTGGGAGTTCTCGGGTGTGTTTTGCACAACACACCCCATCTCTTCCAGCAGAAAGTCCTCGGCCATTGAAATTGCGCAGCATCCTCGACATGAGCCCTTTTACAGTGACAGACCACACCCCAATGGAGATCGTGGTGGATATCTTCCGAAAGCTGGGGCTGAGGCAGTGCCTCGTCACACACAACGGGATTGTCTTGGGGATCATCACAAAGAAGAACATTTTAGAGCATCTCGAGCAACTAAAGCAGCACGTGGAGCCCTTGACGCCTGCTTGGCATTATAACAAAAAAAGATATCCTCCGTCATATGGCCCAGACGGCAAACCAAGACCCCGCTTCAATAATGTTCAACTGAACCCCATAGATGAGGAGAGAGAAGAAACAGAAGAGGAAGTTCATTTGTTGAATAGCACAACTCTTTAA

Related Sequences

XP_004852979.1 Protein

Clcn3 PREDICTED: H(+)/Cl(-) exchange transporter 3 isoform X1 [Heterocephalus glaber]

Length: 866 aa      View alignments
>XP_004852979.1
MESEQLFHRGYYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDNLLDGDTAVGTHYTMTNGGSINSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLYDSWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGICLSALWYNHEQCCWGSNETTFEERDKCPQWKTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTKFGKYPVLEVIIVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGVGVYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRNDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMSKESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHNGIVLGIITKKNILEHLEQLKQHVEPLTPAWHYNKKRYPPSYGPDGKPRPRFNNVQLNPIDEEREETEEEVHLLNSTTL