Sequence details NCBI ID: XM_004852788.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema4b
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, transcript variant X4
Entrez Gene ID 101710342

Database interlinks

Part of NW_004624768.1 (Scaffold)

For more information consult the page for NW_004624768.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4B ENSCPOG00000009429 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008465, Guinea pig)

Protein Percentage 92.67%
CDS Percentage 90.43%
Ka/Ks Ratio 0.0846 (Ka = 0.0359, Ks = 0.4247)

SEMA4B ENSG00000185033 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B

External Links

Gene Match (Ensembl Protein ID: ENSP00000394720, Human)

Protein Percentage 83.56%
CDS Percentage 85.3%
Ka/Ks Ratio 0.14792 (Ka = 0.0862, Ks = 0.5826)

Sema4b ENSMUSG00000030539 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032754, Mouse)

Protein Percentage 82.07%
CDS Percentage 81.59%
Ka/Ks Ratio 0.13256 (Ka = 0.1039, Ks = 0.7838)

Sema4b ENSRNOG00000025167 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B (Sema4b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000030864, Rat)

Protein Percentage 82.82%
CDS Percentage 82.08%
Ka/Ks Ratio 0.10936 (Ka = 0.0945, Ks = 0.8645)

Genome Location

Sequence Coding sequence

Length: 2469 bp    Location: 17170802..17208601   Strand: +
Raw sequence   
>XM_004852788.1
ATGGCCCGGCCGAGCCCACCCCGCGCCCCACCGCTGCTCCTGCTCGCTGTGCTGCTCCTGTCGCCGGCCTCGGCGCGGGTGCGCGGCCCCCGGATCAGCCTGCCTCTGGGCTCTAAAGAGCGGCCGATTCTCAAGTTCAGAGCGGAAAATGTCTCCAACTACACAGCCCTTCTGCTGAGCAGGGATGGCAGCACCTTGTACGTGGGCGCCCGGGAGACCCTCTTTGCACTCAACAGCAGTGCCAGCTTCCTGCCGGGTGGGCAGTACCAGCAGCTGCCATGGCCCGCGGATGCAGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCGAAGCGTGACTGTCAGAACTACATCAAGATCTTGCTGCCACTCAACAGCAGCCACCTGTTCACCTGTGGCACAGCAGCCTTCAGCCCCCTGTGTACCTATATTAGTGTGGAGAACTTCACCCTGGCACAGGACCAGACAGGGAATGTCCTCCTGGAAGATGGCAAGGGCCGTTGTCCCTTTGACCCCAATTTCAAGTCCACAGCCCTGGTGGTTGATGGGGAGCTCTACACAGGAACAGTCAGCAGCTTCCAGGGGAACGACCCAGCCATTTCCCGCAGCCATAGTCTGCGCCCCACCAAGACGGAGAGCTCCCTCAACTGGCTGCAAGATCCTGCCTTTGTGGCCTCGGCCTACATTCCCGAGAGGCTGGGCAGTTCCCATGGTGATGATGACAAGATCTACTTCTTCTTCAGCGAGACTGGCCAGGAGTTCGAGTTCTTTGAGAACACCATCGTGTCTCGAGTTGCCCGAATCTGCAAGGGTGATGAGGGTGGTGAGCGGGTGCTGCAGCAGCGCTGGACGTCCTTCCTCAAGGCCCAGCTGCTGTGCTCTCGGCCTGACGACGGCTTCCCATTCAACGTGCTGCAGGATGTCTTCACGATGAGTCCCAGTCCCCAGGACTGGCGTCAAACCCTGTTCTATGGGGTCTTCACTTCCCAGTGGAATGGGGGGACTACTGAGGGCTCTGCCGTGTGTGTCTTCTCCATCAACGATGTGCAGAGGGCCTTCAGTGGCCTGTACAAGGAGGTGAACCGCGAGACACAGCAGTGGTACACAGTGACCCACCCAGTGCCCACACCCCGGCCTGGATCGTGCATCACCAACAGTGCCCGGGAGCGGAAGATCCACTCCTCCCTGCAGCTCCCAGACCGCGTGCTGAACTTCCTCAAGGATCACTTCCTGATGGACGGGCAGGTGCGCAGCCAGATGCTGCTGTTGCAGCCTCGAGCCCGCTACCAACGCGTGGCTGTGCACCGAGTCCCTGTCCTGGACCGCACCTACGACGTCCTCTTCCTGGGCACTGGTGATGGCCGACTGCACAAGGCAGTGGACATTGGGCCCAGGATGCACATCATCGAGGAGCTGCAGGTCTTCCCACCGGAACAGCCTGTGCAGAACCTACTTCTGGACAGCCATAGGGGGCTGCTGTATGTGGCATCCCACTCTGGCATAGTCCAGGTGCCCGTGGCCAACTGCAGCCTGTACCGGAGCTGTGGGGACTGCGTCCTTGCCCGCGACCCCTACTGTGCTTGGAGTGGCTCCAGCTGCAGCCACATCAGCGTCTACCAGCCTGAGCTGGCCTCCAGGCCATGGATCCAGGATGTCGAAGGGGGCAATGCCAAGGAGCTCTGCAACATGTCCAGGTCCAGGCCCCGGGCTTCTGTAACAGCAGACCGGAAGTCCTGTGAGCACATCCAGTTCCAGCCCAACACAGTAAACACCTTGGCCTGCCCACTTCTGTCCAACCTGGCCACCCGGCTCTGGCTCCATGACAAGGCCCCTGTCAATGCCTCATCATCCTACCGGGTACTGCCCACTGGGGACTTGCTGCTGGTGGGCACCCAGGAAAGGCTGGGGGTCTTTGAGTGCTGGTCACAAGAGGAGGGCTTCCAGCAGCTGGTGACCAGCTACTGCCCAGAAGTGGTGGACGACGGGATGGCACACCGAACAGACCGGGGTGGCAGTGTCCCTGTCATCATCAACACGTCAAGGGTGAGTGCGCCAGCTGCCGGCAGGTCCAGCTGGGGTGTGGACAAGTCCTACTGGAATGAGTTCCTGGTGATGTGCACCCTCTTTGGGCTTGCTGTGGTGCTTCTGTTTCTGTTCTTCCTCTACCGGCACCGAGACGGCATGAAAGTCTTCCTGAAGCAGGGTGAGTGTGCCACTGTGCATCCCAAGACTCGCCCTGTGGTGCTGCCACCCGAGACCCGACCGCTCAACGGCGTTGGCCCCCCTAGCACCCCACTGGATCACCGAGGCTACCAGGCTCTGTCAGATAGCTCCCCGGGGCCCCAGGTCTTCACCGAGTCCGAGAAGAGGCCACTCAGCATCCAGGACAGTTTTGTCGAGGTGTCCCCTGTGTGCCCTCGGCCCCGGGTCCGCCTGGGCTCTGAAATCCGTGACTCTGTGGTGTGA

Related Sequences

XP_004852845.1 Protein

Sema4b PREDICTED: semaphorin-4B isoform X4 [Heterocephalus glaber]

Length: 822 aa      View alignments
>XP_004852845.1
MARPSPPRAPPLLLLAVLLLSPASARVRGPRISLPLGSKERPILKFRAENVSNYTALLLSRDGSTLYVGARETLFALNSSASFLPGGQYQQLPWPADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLFTCGTAAFSPLCTYISVENFTLAQDQTGNVLLEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSHSLRPTKTESSLNWLQDPAFVASAYIPERLGSSHGDDDKIYFFFSETGQEFEFFENTIVSRVARICKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTMSPSPQDWRQTLFYGVFTSQWNGGTTEGSAVCVFSINDVQRAFSGLYKEVNRETQQWYTVTHPVPTPRPGSCITNSARERKIHSSLQLPDRVLNFLKDHFLMDGQVRSQMLLLQPRARYQRVAVHRVPVLDRTYDVLFLGTGDGRLHKAVDIGPRMHIIEELQVFPPEQPVQNLLLDSHRGLLYVASHSGIVQVPVANCSLYRSCGDCVLARDPYCAWSGSSCSHISVYQPELASRPWIQDVEGGNAKELCNMSRSRPRASVTADRKSCEHIQFQPNTVNTLACPLLSNLATRLWLHDKAPVNASSSYRVLPTGDLLLVGTQERLGVFECWSQEEGFQQLVTSYCPEVVDDGMAHRTDRGGSVPVIINTSRVSAPAAGRSSWGVDKSYWNEFLVMCTLFGLAVVLLFLFFLYRHRDGMKVFLKQGECATVHPKTRPVVLPPETRPLNGVGPPSTPLDHRGYQALSDSSPGPQVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV