Sequence details NCBI ID: XM_004852672.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrk1
Gene Name leucine-rich repeat kinase 1, transcript variant X1
Entrez Gene ID 101699472

Database interlinks

Part of NW_004624768.1 (Scaffold)

For more information consult the page for NW_004624768.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRK1 ENSCPOG00000008329 (Guinea pig)

Gene Details

leucine-rich repeat kinase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007487, Guinea pig)

Protein Percentage 93.33%
CDS Percentage 91.38%
Ka/Ks Ratio 0.08409 (Ka = 0.0308, Ks = 0.3666)

LRRK1 ENSG00000154237 (Human)

Gene Details

leucine-rich repeat kinase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000373600, Human)

Protein Percentage 90.18%
CDS Percentage 87.93%
Ka/Ks Ratio 0.08551 (Ka = 0.0485, Ks = 0.5671)

Lrrk1 ENSMUSG00000015133 (Mouse)

Gene Details

leucine-rich repeat kinase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000015277, Mouse)

Protein Percentage 88.69%
CDS Percentage 85.07%
Ka/Ks Ratio 0.07501 (Ka = 0.0579, Ks = 0.7722)

Lrrk1 ENSRNOG00000012730 (Rat)

Gene Details

leucine-rich repeat kinase 1 (Lrrk1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016959, Rat)

Protein Percentage 88.14%
CDS Percentage 85.22%
Ka/Ks Ratio 0.08512 (Ka = 0.0616, Ks = 0.7238)

Genome Location

Sequence Coding sequence

Length: 6027 bp    Location: 3844446..3714886   Strand: -
Raw sequence   
>XM_004852672.1
ATGGCTGGCATGTCGCAGAGTCCACCCAGCATGTACTGGTGTGTGGGCCCAGAGGGATCAACTTTGAGTCCAGAACGCACCATGGAGACCCAAAGTGGTGCCAGGGACATGGGCAGCAAGCTGTCCACGCCAGGTGGGGACTCCACAGCACCTCGGTCCCCCAGGATGGAGGGCATTTACACCGCATACAAACAGGGAGACCTCAGCAGGGCTCGAGACCTGCTCAGGCAGGCCTGTGAGGACAGCACATCCCAGCTGGAAAAGGGTCAGCTCCTGAGCATCTCAGCGGCCCATGGGGATCTAGAGACGGTCCGGTATCTACTCACCGAGAAACGGGTGGAGCTGTCCACGGAGCCCACTGATGACAATGCAGCCGTCGTGGCTGCACATTTTGGGCACACGGAAGTTGTGCAGGAGCTGCTTGAGTCCTTGTCAGGTCCCTCCAGCCCGCAGCGCCTGCTGAACTGGATGCTGGCCTTGGCTTGCCAGCGAGGGCACCTGGGCGTCGTGAAGCTCCTGGTCCTGACGCACGGGGCCGACCCGCAGAGCTACGCGGTGCGGAGGAACGAGTTCCCGGTCATCGTGCGCCTGCCGCTCTACGCCGCCATCAAGGCAGGGAATGAAGACATTGCCATATTCCTGCTTCGGCACGGGGCGTTTTTCTGCTCCTATATCCTCCTGGACAGTCCTGACCCCAGCCGGCATCTGCTCAGGAAGTATTTCATTGAAGCCAGCGTCCTGCCCGGCAGCCGTGCGGGGAAAACCCCACTGCGTGTGAAATGGTCCCATCTCAGGTTGCCCTGGGTGAATCTCGACTGGCTCATAGACATCTCCTGCCAGATCACAGAGCTCGATCTTTCTGCCAACTGCCTGGCTTCCCTCCCCTCCGTCATCCCCTGGGGACTCATCAACCTCCAGAAGCTGAACCTCTCAGACAACCAGCTGGGAGAGCTGCCCAGTGTGCAGTCATCGGACGAGATCATCTGCTCCAGGCTGCTTGACATTGATATTTCCAGCAACAAGTTGTCCCACCTCCCGCCTGGATTCTTGCACCTCTCAAAACTTCAAAAACTGACAGCATCTAAAAATTATTTAGAAAAATTGTTCGAAGAAGAAAGTGCCACCAACTGGATTGGTCTTCGGAAGCTACAGGAACTTGACATATCTGACAATAAACTGACAGAACTCCCTGCTGTTTTCCTGCATTCTTTCAAATCGCTCAGCTGCCTGAATGTCTCCAGAAACAGTCTGAAGGTGTTCCCAGACCCCTGGGCCTGCCCCTTGAAATGTTGTAAAGCATCCAAAAATGCCCTGGAATCTCTGCCAGACAAAATGTGTATCTTTTGGAAAAGCCACCTTAAGGATGTGGATTTTTCAGAAAACGCACTGAAAGAAGTTCCCATAGGACTTTTCCAGCTTGATGCCCTCATGTTCTTGAGGATACAGGGAAACCAGCTGGTGGCCCTGCCTCCTCCAGAGAAGTGGACCTGCAGACAGCTCAAAACCCTGGACCTCTCCAGAAACCAATTTGGCAAAAGTGAAGATGGACTTAAAACAAAGCGCATTTCCTTTTTCACCACCAGAGGCCGCCAGCGTTCAGGGTCAGAGCCAGGGTGCGTGCTGGAATTTCCAACCTTCTTGAGTGAGTCTTTAGAAGTCCTGTGTCTGAATGACAATCACCTGGATGCAGTCCCGCCCTCGGTTTGCCTGCTGAAGAGCTTATCGGAGCTCTACTTGGGAAACAACCCTGGCCTCCGAGAGCTCCCTTCTGAGCTGGGGCAGCTGAGCAACCTCTGGCAGCTGGACGTGGAAGACTTGAGCATCAGCAACGTGCCTGCGGAGATCAGGAAAGAAGGCCCCAAAGCAATGCTGTCTTTCCTGCGGGCTCAGCTGCGGAGAGCAGAGAAGTGCAAGGTGATGAAGATGATCGTCGTGGGTCCCCCGCGCCAGGGCAAGTCCACCCTCCTGGAGATCTTGCAGAGCGGCAGGGCCTCCCAGGTGGCGCACAGCGAGGCCACCATCCGGACGACCAAGTGGGAGCTCCAGAGGCCGGCAGGCTCCAAAGCCAAGGTTGAGTCCGTGGAATTCAACGTGTGGGACATCGGGGGCCCTGCCAGCATGGCCACCGTCAACCAGTGCTTCTTCACGGACAAGGCCCTGTACGTGGTGGTCTGGAACCTGGCGCTGGGAGAGGAGGCTCTGGCCAGCCTGCAGTTCTGGCTGCTCAGCATCGAGGCCAAGGCCCCCAATGCAGTGGTGCTGGTGGTCGGAACACACCTGGACTTAATTGAAGCCAAATTCCGAGTAGAGAGAATTGCAACTCTTCGCGCCTACGTGCTGGCCCTGTGCCGCTCACCCTCGGGGTCCAGAGCCACTGGCTTCCCGGACATCACTTTCAAACACTTACATGAGATCTCCTGCAAGAGCCTAGAAGGCCAGGAGGGGCTACGGCAGCTGATCTTCCATGTCACATGCAACATGAAGGACGTGGGCAGCACCATCGGCTGCCAGCGGCTTGCGGGGAGGCTGATCCCCAGGAGCTACCTGAGCCTGCAGGAGGCCGTGCTGGCAGAGCAGCACCGCCGCAGCCAGGGAGACGACGTGCAATACCTGACGGACAGGCAGCTGGAGCAGCTGGTGGGGCAGACGCCCGGCAACGACATCAAAGACTACGAGGACCTGCAGTCTGCCATCAACTTCCTCATAGAAACTGGGACGCTCCTGCACTTCCCCGACACCAGCCACGGCCTGCGGAACCTTTACTTCCTCGACCCCATTTGGCTGTCCGAGTGTCTGCAGAGGATCTTCAACATTAAGGGCTCTCGCTCGGTAGCCAAGAACGGGGTGATCCGAGCGGAGGACCTCAGGATGCTGCTGGTGGGGACAGGCTTCACAAAGCAGACTGAGGAGCAGTACTTCCAGTTCCTGGCCAAGTTTGAGATCGCCCTGCCTGTCGCCAATGACAGCTACCTCCTGCCACACCTCCTTCCATCCAAACCCGGCCTGGACATGCACGGCACGCGACATCCTGCAGCCAACACTATCCAGAGGGTGTTCAAGATGAGCTTTGTGCCGGTCGGCTTCTGGCAAAGGTTCATCGCGCGGATGCTGATCAGCTTGGCTGAAATGGATCTGCAGCTTTTTGAGAACAAGAAGAATACTAAAAGCAGAAACAGGAAAGTCACCATTTACAGTTTTACAGGGAACCAGAGAAACCGCTGCAGCACATTCAGAGTGAAGAGGAACCAGACCATCTACTGGCAGGAAGGGCTCCTGGTCACTTTCGATGGGGGCTACCTCAGTGTGGAATCTTCCGATGTGAACTGGAAAAAGAAAAAGAGTGGAGGGATTAAAATCATTTGCCAGTCAGAAATGAGGGACTTCTCAGCGATGGCGTTTATCACGGATCATGTGAATTCTCTGATCGATCAGTGGTTTCCTGCCCTGACGGCCACGGAAAGTGACGGGACCCCACTCATGGAGCAGTACGTGCCCTGCCCTGTGTGCGAGACATCCTGGGTGCAGCACGCTGACCCCAGTGAGAAGTCGGAGGGCGTGCAGTACTTCGACATGGAAGACTGCGTGCTGACAGCCATCGAGCGGGACTTCATCTCCTGCCCCAGACACCCGGACCTCCCAGTCCCGCTCCAGGAGCTGGTCCCCGAGCTGTTCATGACCGACTTTCCGGCCAGGCTTTTCCTGGAGAACAGCAAGCTGGAGCACAGCGAGGATGAGAGCAGCATCCTGGGCCAGGGTGGCAGCGGCACCGTCATCTACCGCGCCCGGTACCAGGGCCAGCCCGTGGCTGTGAAGCGATTCCACATCAAGAAATTCAAGAATTTCGCTAATGCACCCGCAGACACCATGCTGAGGCACCTGCGGGCCACGGACGCCATGAAGAACTTCTCGGAGTTCCGGCAAGAGGCCAGCATGCTGCATGCCCTGCACCACCCATGCATCGTGGCACTCGTCGGCATTAGCATCCACCCACTCTGTTTTGCCCTGGAGCTTGCCCCGCTCAGCAGCCTCAACACCGTGCTGTCTGAGAATGCCAGAGATTCTTCCTTCATGCCCCTGGGACACATGCTAACCCAAAAAATAGCCTACCAGATTGCCTCAGGCTTGGCTTATCTGCACAAGAAGAACATCATCTTTTGTGACCTGAAGTCGGACAACATTCTCGTGTGGTCCCTGGATGTCAAGGAGCACATCAACATCAAGCTGTCAGACTACGGGATCTCGAGGCAGTCCTTTCATGAGGGCGCCCTGGGTGTGGAGGGCACGCCCGGCTACCAGGCCCCGGAGATCAGGCCTCGGATTGTGTATGATGAGAAGGTAGACATGTTCTCCTATGGAATGGTGCTCTACGAGTTGCTGTCAGGACAGCGCCCTGCGCTGGGTCACCACCAGCTTCAGATTGCCAAGAAGCTGTCCAAAGGCATCCGCCCCCTTCTGGGGCAGCCAGAGGAGGTGCAGTTCCACCGACTCCAGGTGCTCATGACGGAGTGCTGGGACACGAAGCCCGAGAAGCGCCCGCTGGCCCTGTCCGTGGTGAGCCAGATGAAGGACCCAACCTTCGCCACCTTCATGTACCTGCTGCCCTGTGGGAGGCAGACAGCCTTCTTCTCCTCCCAGGGCCAAGCCTACACGGTGGTGTTTTGGGACGGGAAAGAGGAATCCAGGAATTACACGGTGGTGAACACGGAGAAGGGGCTTCTGGAAGTGCAGAGGATGGCCTGTGCCGGCATGAAGCTGAGCTGCCAGATCAAGGTCCAGAGCTCGCTGTGGACGGCCACCGAGGACCAGAAGATCTACATCTACAGCCTCAAGGGCATGTGCCCCCTGAACGCGCCCCAGCAGGCCTTGGACACTCCAGCTGTCGTCACCTGCTTCTTGGCGGTTCCTGTTATTAAGAAGAACTCCTTCCTGGTGCTGGCAGGCCTGGCTGATGGGCTCGTGGCCGTGTTCCCGGTGGTGCGGGGCGTCCCGAGGGAGAGTTGCTCCTACCTGTGCTCACACACAGCCAATAGGTCCAAGTTCGGCATCCCAGACGACGATGCGCGGCAGAACCCCTACGCGGTGAAGGCCATGGAGGTGGTCAACAGCGGGTCAGAGGTCTGGTACAGCAACGGGCCAGGCCTCCTCGTCATCGACTGCGCAGCCCTGGACATCAGCAGGCGGCTGGAGCCCTACACCACCCCCTCGGCCATCACATCGGTCGTGTGCAGCTCGGACTGCAGAGGGGAGGAAGTCGTCTGGTGCTTGGATGACAAGACCAACTCCCTGGTGATGTACCATTCGGCTACCTACCAGCTGTGTGCCCGGTACTCCTGCGGGGACCCCAGCCCCCTCAGGGACATGTTCCCCGTGCGGCCCTCAGGTCCAGAAGCGCTGCATAGCCACACAGCCAGCCCACAGGAGCCCGAGGGAGACTGCATCGCAGATGTGAGCATCATGTACAGTGAGGAGCTGGGCACACAGATCTTGACCCACCAGGACTCACTGACTGACTATTGCTCCATGTCCTCCTACTCCTCGTCCCCACCCTCCAGCCTGCTCAGCCCACCAGCCAGCAGTCCCAGCATGCCTTTCTCCACAGACTGCGAGGACCCGGAGCGGCTGCAGGAGCCCAGCGCCACCTCGGGCAGGTCTGAGCATGACCTGACCCCCATGGATGGGGAGCCGCTCAGCCAGCACCTGCAGGCCGTGAAGGTCCTCGCCGTCAGAGACCTCATCTGGGTTCCCAGGCATGGCGGAGATATTATCGTCATTGGCCTGGAGAAGGATTCGGGTGCCCAGCGGGGCCGAGTCATCGCTGTCTTAAAAGCCCGAGAACTGACTCCACATGGGCTGCTGGTGGATGCAGCTGTGGTGGCAAAGGACACCGTGGTGTGTGGCTTTGAGAACGAAAACACAGAGTGGTGCCTGGCTGTCTGGAGGGGCTGGGGCGCCAGGGACTTTGACATTTTCTACCATTCCTGCGAAGAGCTCGGCCGGCTGGAGGCCTGCGCGCGCAAGAGAAGGTAA

Related Sequences

XP_004852729.1 Protein

Lrrk1 PREDICTED: leucine-rich repeat serine/threonine-protein kinase 1 isoform X1 [Heterocephalus glaber]

Length: 2008 aa      View alignments
>XP_004852729.1
MAGMSQSPPSMYWCVGPEGSTLSPERTMETQSGARDMGSKLSTPGGDSTAPRSPRMEGIYTAYKQGDLSRARDLLRQACEDSTSQLEKGQLLSISAAHGDLETVRYLLTEKRVELSTEPTDDNAAVVAAHFGHTEVVQELLESLSGPSSPQRLLNWMLALACQRGHLGVVKLLVLTHGADPQSYAVRRNEFPVIVRLPLYAAIKAGNEDIAIFLLRHGAFFCSYILLDSPDPSRHLLRKYFIEASVLPGSRAGKTPLRVKWSHLRLPWVNLDWLIDISCQITELDLSANCLASLPSVIPWGLINLQKLNLSDNQLGELPSVQSSDEIICSRLLDIDISSNKLSHLPPGFLHLSKLQKLTASKNYLEKLFEEESATNWIGLRKLQELDISDNKLTELPAVFLHSFKSLSCLNVSRNSLKVFPDPWACPLKCCKASKNALESLPDKMCIFWKSHLKDVDFSENALKEVPIGLFQLDALMFLRIQGNQLVALPPPEKWTCRQLKTLDLSRNQFGKSEDGLKTKRISFFTTRGRQRSGSEPGCVLEFPTFLSESLEVLCLNDNHLDAVPPSVCLLKSLSELYLGNNPGLRELPSELGQLSNLWQLDVEDLSISNVPAEIRKEGPKAMLSFLRAQLRRAEKCKVMKMIVVGPPRQGKSTLLEILQSGRASQVAHSEATIRTTKWELQRPAGSKAKVESVEFNVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEALASLQFWLLSIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLALCRSPSGSRATGFPDITFKHLHEISCKSLEGQEGLRQLIFHVTCNMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEQHRRSQGDDVQYLTDRQLEQLVGQTPGNDIKDYEDLQSAINFLIETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRMLLVGTGFTKQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDMHGTRHPAANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENKKNTKSRNRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGIKIICQSEMRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCETSWVQHADPSEKSEGVQYFDMEDCVLTAIERDFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDESSILGQGGSGTVIYRARYQGQPVAVKRFHIKKFKNFANAPADTMLRHLRATDAMKNFSEFRQEASMLHALHHPCIVALVGISIHPLCFALELAPLSSLNTVLSENARDSSFMPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPLLGQPEEVQFHRLQVLMTECWDTKPEKRPLALSVVSQMKDPTFATFMYLLPCGRQTAFFSSQGQAYTVVFWDGKEESRNYTVVNTEKGLLEVQRMACAGMKLSCQIKVQSSLWTATEDQKIYIYSLKGMCPLNAPQQALDTPAVVTCFLAVPVIKKNSFLVLAGLADGLVAVFPVVRGVPRESCSYLCSHTANRSKFGIPDDDARQNPYAVKAMEVVNSGSEVWYSNGPGLLVIDCAALDISRRLEPYTTPSAITSVVCSSDCRGEEVVWCLDDKTNSLVMYHSATYQLCARYSCGDPSPLRDMFPVRPSGPEALHSHTASPQEPEGDCIADVSIMYSEELGTQILTHQDSLTDYCSMSSYSSSPPSSLLSPPASSPSMPFSTDCEDPERLQEPSATSGRSEHDLTPMDGEPLSQHLQAVKVLAVRDLIWVPRHGGDIIVIGLEKDSGAQRGRVIAVLKARELTPHGLLVDAAVVAKDTVVCGFENENTEWCLAVWRGWGARDFDIFYHSCEELGRLEACARKRR