Sequence details NCBI ID: XM_004852340.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sf3b2
Gene Name splicing factor 3b, subunit 2, 145kDa, transcript variant X5
Entrez Gene ID 101702423

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SF3B2 ENSCPOG00000008294 (Guinea pig)

Gene Details

splicing factor 3b, subunit 2, 145kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007457, Guinea pig)

Protein Percentage 99.24%
CDS Percentage 93.91%
Ka/Ks Ratio 0.01663 (Ka = 0.0041, Ks = 0.2486)

SF3B2 ENSG00000087365 (Human)

Gene Details

splicing factor 3b, subunit 2, 145kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000318861, Human)

Protein Percentage 97.95%
CDS Percentage 92.14%
Ka/Ks Ratio 0.02923 (Ka = 0.01, Ks = 0.3425)

Sf3b2 ENSMUSG00000024853 (Mouse)

Gene Details

splicing factor 3b, subunit 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025774, Mouse)

Protein Percentage 98.06%
CDS Percentage 88.57%
Ka/Ks Ratio 0.01461 (Ka = 0.009, Ks = 0.6151)

Sf3b2 ENSRNOG00000020412 (Rat)

Gene Details

splicing factor 3b, subunit 2 (Sf3b2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060335, Rat)

Protein Percentage 98.29%
CDS Percentage 89.1%
Ka/Ks Ratio 0.01371 (Ka = 0.0079, Ks = 0.5774)

Genome Location

Sequence Coding sequence

Length: 2637 bp    Location: 20340164..20326499   Strand: -
Raw sequence   
>XM_004852340.1
ATGGCGGCCGAGCATTCCGAGCCTCCCAAAGGAGAATTGCAGCTGCCTCCGCCGCCACCTCCAGGCCACTATGGCGCCTGGGCTGCCCAGGAACTTCAGGCCAAGTTGGCAGAAATTGGAGCTCCGATCCAGGGGAGTCGTGAGGAGCTGGTGGAGCGCCTGCAGACTTACACCCGCCAGACTGGCATTGTGCTCAGTCGGCCGGTTTTGAGAGGGGAGGATGGGGACAAAGCCGCTCCCCCTCCCATGTCTGCACAGCTTTCTGGGATTCCCATGCCGCCGCCACCCATGGGACTCCCTCCTCTGCAGCCTCCTCCACCGCCCCCACCACCTCCACCAGGCCTTGGCCTGGGCTTTCCTATGGCTCACCCACCAAATTTGGGGCCCCCGCCTCCTCTTCGTGTGGGTGAGCCTGTGGCACTGTCCGAAGAGGAGCGGCTGAAGCTGGCGCAGCAGCAGGCAGCATTGCTGATGCAACAAGAAGAACGTGCCAAGCAGGCTGCTGTGTTACTGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGCACCCCAGTCCCTCGACCCCCACAAGACATGGGTCAGATTGGTGTTCGCACCCCTCTGGGCCCTCGAGTAGCAGCTCCTGTAGGTCCAGTGGGCCCCACTCCCACTGTTCTGCCCATGGGGGCTCCTGTTCCCCGGCCTCGTGGTCCCCCACCACCCCCCGGAGATGAGAACAGAGAGATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTAGAGAAGATCTTGCAGCTGAAGGAGAGCCGCCAGGAAGAGATGAACTCGCAGCAGGAGGAAGAGGAAATGGAAACAGACACTCGATCGTCCCTGGGCCAGTCAGCATCAGAGACTGAAGAGGACACAGTGTCCATATCCAAAAAGGAGAAAAACCGCAAGCGTCGTAACCGAAAGAAGAAGAAAAAGACCCAGCGGGTTCGGGTGGCTTCCTTGGAGAGCTCTGGAGACCGAGAGAAAGACTTGGCCCGGTCCCGAGGTTCTGAGTCCCCTGCTGCTGATGTGGAGATTGAATATGTGACTGAAGAACCTGAAATCTATGAGCCCAACTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAGCTCACAGATGATGTGAAGAAGGAGAAAGAGAAGGAGCCAGAGAAACTTGACAAAACAGAGAACTCTGCAGCCCCCAAGAAGAAGGGGTTTGAAGAGGAACACAAGGACAGTGATGACGACAGCAGTGATGATGAGCAGGAAAAGAAGCCAGAAGCTCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAATCGGTTCACTGTGGCTGAACTCAAGCAGCTGGTGGCTCGGCCTGATGTTGTGGAGATGCATGATGTGACAGCGCAGGACCCTAAGCTCTTGGTTCATCTCAAGGCCACCCGGAACTCTGTTCCTGTGCCACGACACTGGTGTTTTAAGCGCAAATACCTGCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTACCAGATTTCATTAAACGCACAGGCATCCAGGAGATGCGTGAAGCCCTCCAGGAAAAGGAAGAACAGAAGACCATGAAGTCTAAAATGCGGGAGAAAGTTCGGCCTAAGATGGGAAAGATTGACATTGATTACCAAAAACTTCATGACGCCTTCTTCAAGTGGCAGACCAAGCCAAAGCTGACCATTCACGGGGACCTGTACTATGAGGGGAAAGAGTTTGAGACGAGACTGAAGGAGAAGAAGCCCGGAGACTTGTCTGATGAGCTGAGGATTTCCTTGGGGATGCCAGTGGGACCAAATGCTCACAAGGTCCCTCCCCCATGGCTGATTGCTATGCAGCGATATGGACCACCCCCATCATACCCCAACCTGAAAATTCCTGGGCTCAACTCTCCTATCCCTGAGAGCTGTTCCTTTGGCTACCATGCTGGTGGCTGGGGCAAACCGCCAGTAGATGAGACCGGAAAACCACTCTACGGGGATGTCTTTGGAACCAATGCTGCTGAATTTCAGACCAAGACTGAAGAAGAAGAGATAGATCGGACCCCTTGGGGGGAACTAGAGCCATCTGATGAAGAATCCTCCGAAGAGGAGGAAGAGGAAGAAAGTGATGAAGACAAACCAGATGAGACAGGCTTTATTACGCCAGCAGACAGTGGCCTCATCACTCCTGGAGGGTTCTCATCAGTGCCGGCTGGAATGGAGACCCCTGAACTCATTGAGTTGAGAAAGAAGAAGATAGAAGAGGCGATGGATGGAAGTGAAACACCTCAGTTGTTCACTGTGTTGCCAGAGAAGAGAACAGCCACCGTTGGGGGAGCCATGATGGGATCAACCCACATTTATGACATGTCCACAGTTATGAGCCGGAAGGGTCCAGCCCCAGAGCTGCAAGGTGTGGAAGTGGCCCTGGCTCCTGAGGAGTTGGAGCTAGATCCAATGGCCATGACCCAGAAGTATGAGGAGCATGTGCGGGAGCAGCAGGCACAAGTGGAGAAGGAAGACTTCAGTGACATGGTGGCCGAGCATGCTGCCAAACAGAAGCAAAAGAAACGGAAAGCTCAGCCCCAGGACAGCCGAGGGGGCAGCAAGAAATATAAGGAGTTCAAGTTTTAG

Related Sequences

XP_004852397.1 Protein

Sf3b2 PREDICTED: splicing factor 3B subunit 2 isoform X5 [Heterocephalus glaber]

Length: 878 aa      View alignments
>XP_004852397.1
MAAEHSEPPKGELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGSREELVERLQTYTRQTGIVLSRPVLRGEDGDKAAPPPMSAQLSGIPMPPPPMGLPPLQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDTRSSLGQSASETEEDTVSISKKEKNRKRRNRKKKKKTQRVRVASLESSGDREKDLARSRGSESPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKTENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF