Sequence details NCBI ID: XM_004852335.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pacs1
Gene Name phosphofurin acidic cluster sorting protein 1, transcript variant X2
Entrez Gene ID 101701857

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PACS1 ENSCPOG00000001408 (Guinea pig)

Gene Details

phosphofurin acidic cluster sorting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001272, Guinea pig)

Protein Percentage 98.24%
CDS Percentage 95.14%
Ka/Ks Ratio 0.05159 (Ka = 0.0093, Ks = 0.1812)

PACS1 ENSG00000175115 (Human)

Gene Details

phosphofurin acidic cluster sorting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000316454, Human)

Protein Percentage 96.88%
CDS Percentage 91.39%
Ka/Ks Ratio 0.04328 (Ka = 0.0168, Ks = 0.3874)

Pacs1 ENSMUSG00000024855 (Mouse)

Gene Details

phosphofurin acidic cluster sorting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025786, Mouse)

Protein Percentage 96.25%
CDS Percentage 90.14%
Ka/Ks Ratio 0.0433 (Ka = 0.0194, Ks = 0.4481)

Pacs1 ENSRNOG00000020350 (Rat)

Gene Details

phosphofurin acidic cluster sorting protein 1 (Pacs1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027632, Rat)

Protein Percentage 95.73%
CDS Percentage 89.48%
Ka/Ks Ratio 0.04948 (Ka = 0.023, Ks = 0.4651)

Genome Location

Sequence Coding sequence

Length: 2883 bp    Location: 20325094..20123845   Strand: -
Raw sequence   
>XM_004852335.1
ATGGCGGAACGCGGAGGGACGGGCGGTGGTCCCGGAGGCGCCGGGGGCAGCAGCGGCCAACGGGGATCCGGGGTCGCCCAGTCCCCGCAGCAGCCGCCTCCGTCTCAGCAGCAGACGCCGCAGCAGCCGACGCCCCCCAAGCTGGCCCAGGCCACCTCGTTGTCCTCAACCGCGGCGGCGGTTGTTTCCTCTTCGTCCTCGTCCACCTCCACCTCCATGGCCGTCGCGGTGGCCTCGGGCACCGTTCCTCCCGGCGGCCCGGGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTTTACGCTACCTGGGAAGTGGACCGGAGCTCGTCCAGCTGCGTCCCCAGGCTGTTCAGCTTGACCCTGAAGAAGCTCATTATGCTAAAAGAAATGGACAAAGATCTTAACTCCGTGGTCATTGCTGTGAAGCTGCAGGGGTCAAAAAGAATTCTTCGTTCCAATGAGATCATCCTTCCAGCTAGTGGCCTGGTAGAAACAGAGCTCCAGTTAACTTTTTCCCTTCAGTACCCTCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGTTGCAAAGGAGAAAGCGATACAAGAACCGGACCATCTTGGGCTATAAGACCCTGGCTGTGGGACTTATCAACATGGCAGAGGTGATGCAGCACCCTAATGAGGGTGCTCTGGTGCTTGGCCTGCACAGCAATGTGAAGGATGTGTCTGTGCCTGTGGCAGAAATAAAGATCTACTCCCTGTCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCCGATCGCTCTCCTGATATTGACAACTATTCTGAGGAAGAGGAGGAGAGCTTTTCATCAGAGCAAGAAGGCAGCGACGATCCATTGCACGGGCAGGACCTGTTCTATGAAGATGAGGATTTACGGAAAGTAAAGAAGACCCGGAGGAAACTCACCTCAACCTCAGCCATCACAAGGCAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAGCGGTTCAAAGTTTCTGATGAGGTTGGTTTCGGCTTAGAGCATGTGTCCCGGGAACAGATTCGAGAGGTGGAAGAAGACCTGGATGAACTGTACGACAGTCTGGAGATGTACAACCCCAGTGACAGCGGCCCTGAAATGGAGGAGACAGAGAGCATCCTGAGCACCCCAAAGCCTAAGCTCAAGCCCTTCTTTGAGGGGATGTCACAATCCAGCTCACAGACGGAGATTGGCAGCCTCAACAGCAAGGGCAGCCTTGGAAAGGACACCACCAGCCCTATGGAATTGGCTGCACTAGAAAAAGTCAAATCTACTTGGATTAAAAACCAAGATGACAGTTTGACTGAAACAGAAACTCTGGAAATCACTGACCAGGATACGTTTGGAGATTTGAGTACAAGTCTGGTTGTGCCTGAAAAAGTCAAAACTCCCATGAAGACCAGCAAAACAGATCTGCAGGGCTCTGCCTCCCCCAGCAAAGTGGAAGGGACTCACACACCCCGGCAGAAGAGGAGCACACCCCTGAAGGAGCGGCAGCTCTCCAAGCCCCTGAGTGAGAGGACCAACAGCTCCGACAGTGAGCGCTCACCTGACCTGGGCCACAGTACACAGATTCCAAGAAAGGTGGTATATGACCAACTGAATCAGATCCTGGTGTCTGATGCAGCCCTCCCAGAAAATGTCATCCTGGTGAACACCACTGACTGGCAGGGCCAGTATGTGGCAGAACTGCTCCAGGACCAGCGGAAGCCTGTTGTATGCACCTGTTCCACTGTGGAGGTCCAGGCCGTGCTGTCTGCTCTGCTCACCCGGATTCAGCGCTACTGCAACTGCAACTCCTCTATGCCAAGACCAGTCAAAGTGGCAGCTGTGGGAGGCCAGAGTTACCTGAGTTCCATCCTCCGGTTCTTTGTCAAGTCCTTGGCCAACAAGACCTCTGATTGGCTGGGCTACATGCGCTTCCTCATCATTCCCCTTGGTTCTCACCCTGTGGCCAAATACTTGGGCTCACTTGACAGTAGATACAGCAGCACCTTCCTTGATTCTGGCTGGAGAGACCTGTTCAGTCGCTCGGAGCCCCCAGTGTCAGAGCAACTGGACGTGGTGGGCCGTGTGATGCAGTATGTCGGTGGGGCGGCTGTAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCCGGCATAAGTTCCCTGATGAAGACTCCTATCAGAAGTTCATTCCCTTCATTGGCGTGGTGAAGGTAGGCCTGGTTGAAGACTCACCCTCCACTACAGGCGACGGGGACGATTCACCTGTGGTCAGCCTTACCGTGCCCTCTACATCACCACCCTCCAGCTCTGGCCTAAGCCGAGATGCCACAGCCACCCCTCCCTCCTCCCCGTCCATGAGCAGTACCCTTGCCGTCATGGGGAGCCCCAATAGTCCATATGGGGACGTGATTGGCCTCCAGGTGGACTACTGGCTAGGCCACCCTGGGGAGCGGAGGAGGGAAGGCGACAAGAGGGATGCCAGCTCCAAAAACACCCTCAAGAGCGTCTTCCGCTCAGTGCAGGTTTCTCGCCTGCCGCATGGTGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAGTTCCCACCATCTTCCTGAGCAAGAAACCCCGGGAAAAGGAAGTGGATTCTAAGAGCCAGGTCATCGAGGGCATCAGCCGCCTCATCTGCTCCGCCAAGCAGCAGCAGACCATGTTGAGAGTGTCCATCGATGGTGTCGAGTGGAGTGACATCAAATTCTTCCAGCTGGCAGCCCAGTGGCCCACGCATGTCAAGCACTTTCCAGTGGGACTCTTCAGTGGCAGCAAGACCACCTGA

Related Sequences

XP_004852392.1 Protein

Pacs1 PREDICTED: phosphofurin acidic cluster sorting protein 1 isoform X2 [Heterocephalus glaber]

Length: 960 aa      View alignments
>XP_004852392.1
MAERGGTGGGPGGAGGSSGQRGSGVAQSPQQPPPSQQQTPQQPTPPKLAQATSLSSTAAAVVSSSSSSTSTSMAVAVASGTVPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLIMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDTTSPMELAALEKVKSTWIKNQDDSLTETETLEITDQDTFGDLSTSLVVPEKVKTPMKTSKTDLQGSASPSKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSTVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGGQSYLSSILRFFVKSLANKTSDWLGYMRFLIIPLGSHPVAKYLGSLDSRYSSTFLDSGWRDLFSRSEPPVSEQLDVVGRVMQYVGGAAVTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTTGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSTLAVMGSPNSPYGDVIGLQVDYWLGHPGERRREGDKRDASSKNTLKSVFRSVQVSRLPHGGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT