Sequence details NCBI ID: XM_004852293.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ccs
Gene Name copper chaperone for superoxide dismutase, transcript variant X1
Entrez Gene ID 101719392

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCS ENSCPOG00000013196 (Guinea pig)

Gene Details

copper chaperone for superoxide dismutase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011879, Guinea pig)

Protein Percentage 85.4%
CDS Percentage 86.01%
Ka/Ks Ratio 0.35813 (Ka = 0.1108, Ks = 0.3094)

CCS ENSG00000173992 (Human)

Gene Details

copper chaperone for superoxide dismutase

External Links

Gene Match (Ensembl Protein ID: ENSP00000436318, Human)

Protein Percentage 88.32%
CDS Percentage 86.86%
Ka/Ks Ratio 0.18069 (Ka = 0.0761, Ks = 0.4212)

Ccs ENSMUSG00000034108 (Mouse)

Gene Details

copper chaperone for superoxide dismutase

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035486, Mouse)

Protein Percentage 85.77%
CDS Percentage 84.18%
Ka/Ks Ratio 0.20407 (Ka = 0.0985, Ks = 0.4827)

Genome Location

Sequence Coding sequence

Length: 894 bp    Location: 19815267..19803945   Strand: -
Raw sequence   
>XM_004852293.1
ATGAAGAAGGGACTTGGAGAGAAATCATGTGGCCAAGTCTCAGGCATTGGAGTGATGGCATCAGACAAGACCCCAGCCCTCAACGGCCGGTCTCTAACGTCCTTGCAGCTGGAGTTCGCCGTGCAGATGACTTGTCAGAGCTGCGTGGACGCGGTGCTCAAGTCCCTACAAGGGGTGACAGGTGTCCAGGATGTAAAGGTGCAGTTGGAGAATCAAATGGTCTTAGTGCAGACCACTCTGCCTAGCCGGGAGGTGCAGGCACTCCTGGAAGGCACTGGGCGGCAGGCTGTACTCAAGGGCATGGGAAGCAGCCAATTGCAGAATCTGGGGGCAGCAGTGGCCATTCTGGGAGGCCCTGGCCCTGTGCAGGGGGTGGTACGCTTCCTACAGCTGAGCCCTGAGCGGTGCCTCATCGAGGGAACCATTGATGGCCTGCAGCCTGGCTTGCATGGGCTCCATGTCCATCAGTATGGGGACCTCACAAGGGACTGCAGCAGCTGTGGGGACCACTTCAACCCTGATGGAAGGTCTCATGGGGGCCCTCAGGACTCTGACCGGCACCATGGAGACCTGGGCAATGTCCATGCTGATGCTGATGGCCGAGCCATCTTCCGGATAGAGGATGAGCAGCTGAAGGTGTGGGATGTGATTGGCCGCAGCCTAGTTATCGATGAGGGAGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCTGGGGAGAGGTTGGCCTGTGGCATCATCGCACGCTCTGCTGGCCTTTTCCAGAACCCCAAACAGATCTGCTCCTGTGATGGTGTCACCATCTGGGAGGAGCGAGGCCGGCCTATTGCTGGTGAGGGCCGGAAGAACTTGGGCCAGCCCCCTGCCCACCTCTGA

Related Sequences

XP_004852350.1 Protein

Ccs PREDICTED: copper chaperone for superoxide dismutase isoform X1 [Heterocephalus glaber]

Length: 297 aa      
>XP_004852350.1
MKKGLGEKSCGQVSGIGVMASDKTPALNGRSLTSLQLEFAVQMTCQSCVDAVLKSLQGVTGVQDVKVQLENQMVLVQTTLPSREVQALLEGTGRQAVLKGMGSSQLQNLGAAVAILGGPGPVQGVVRFLQLSPERCLIEGTIDGLQPGLHGLHVHQYGDLTRDCSSCGDHFNPDGRSHGGPQDSDRHHGDLGNVHADADGRAIFRIEDEQLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGVTIWEERGRPIAGEGRKNLGQPPAHL