Details from NCBI annotation

Gene Symbol Atg13
Gene Name autophagy related 13, transcript variant X6
Entrez Gene ID 101722321

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ATG13 ENSCPOG00000013042 (Guinea pig)

Gene Details

autophagy related 13

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011741, Guinea pig)

Protein Percentage 95.16%
CDS Percentage 92.2%
Ka/Ks Ratio 0.07836 (Ka = 0.0226, Ks = 0.2883)

ATG13 ENSG00000175224 (Human)

Gene Details

autophagy related 13

External Links

Gene Match (Ensembl Protein ID: ENSP00000432412, Human)

Protein Percentage 93.81%
CDS Percentage 88.91%
Ka/Ks Ratio 0.07388 (Ka = 0.0319, Ks = 0.4315)

Atg13 ENSMUSG00000027244 (Mouse)

Gene Details

autophagy related 13

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000076081, Mouse)

Protein Percentage 92.48%
CDS Percentage 86.5%
Ka/Ks Ratio 0.06188 (Ka = 0.0374, Ks = 0.6047)

Atg13 ENSRNOG00000016984 (Rat)

Gene Details

autophagy related 13 (Atg13), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023237, Rat)

Protein Percentage 93.01%
CDS Percentage 87.06%
Ka/Ks Ratio 0.06831 (Ka = 0.0371, Ks = 0.5434)

Genome Location

Sequence Coding sequence

Length: 1554 bp    Location: 1953903..1924672   Strand: -
>XM_004851912.1
ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTCATTAAATTTTTTGCCCTCAAGACTGTCCAAGTGATTGTCCAGGCTCGACTTGGTGAAAAGATTTCAACTCGTTCATCTTCATCCCCAACGGGTTCAGACTGGTTTAACTTAGCGATCAAAGATATCCCCGAGGTCACCCATGAAGCAAAGAAGGCACTGGCAGGGCAGCTGCCTGCCATTGGGCGGTCCATGTGTGTGGAAATCTCGCTCAAGACCTCAGAGGGAGATTCCATGGAGCTGGAGATTTGGTGTCTTGAAATGAATGAAAAGTGTGACAAAGAAATCAAAGTTTCCTACACCGTGTACAACAGACTGTCCCTGCTGCTCAAGTCCCTTCTTGCTATCACGAGGGTGACACCAGCCTACAGGCTCTCCAGAAAGCAGGGGCATGAATATGTCATACTGTACAGGATATACTTTGGGGAAGTTCAGCTGAATGGCTTGGGAGAAGGCTTTCAGACAGTTCGAGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTGTGCTTACAGAATCAACTTGGCATTCATGTCCACCAGGCAATTTGAGAGGACCCCTCCTATCATGGGTATCATTATCGATCACTTTGTGGACCGCCCCTACCCCAGCTCTTCTCCCAGACACCCCTGCATCTACAGGATCGCTGGTGAGGATGCTGGCGGAGTGTACCCGTCGGTGGAAGACTCTCAGGAAGTGTGCACCACTTCATTTTCCACCTCCCCGCCATCGCAGCTCTCCAGCTCTCGCCTTTCCTATCTGCCTGCTGTCCTGGGCCTTGGATCAGCTGACCTGGCTTACCCAGTAGTGTTCCCTGCTGGTCTAAATGCTCCACACCCTCACCAGCTGATGGTTCCTGGGAAGGAGGGGGGAGTGCCCGTCACTCCCAGCCAGCCAACCCATGGTGCCCAGGCTGACCAGGAGAGATTGGCGACCCACACCCTTTCGGATGGGCCCCACTGCCCCGCCACACCTTCCAGCAGTGAGGGCACCGAAACCGTCTCCAACAGCAGTGAGGGCCGGGCCTCCCCCCACGATGTCTTGGAGACCATCTTTGTCCGGAAAGTGGGGGCTTTTGTCAACAAGCCCATCAACCAGGTGACCCTGACGAGCTTGGACATACCCTTTGCCATGTTTGCTCCCAAAAACTTGGAGCTGGAGGATACTGACCCTATGGTGAACCCCCCAGACTCCCCAGAAGCTGTGTCTCCTCTCCACGGCAGCCTGCACTCCGAGGGCTCCAGCGAGGGCAGCAGCGGCAACCCCCACGATGACTTTGTCATGGTCGACTTCAAACCAGCTTTTTCTAAAGACGACATCCTTCCGATGGACTTGGGGACCTTCTACCGTGAGTTTCAGAACCCCCCTCAGCTAAGCAGCCTCTCCATAGACATTGGAGCCCAGTCCATGGCAGAAGACTTGGACTCCCTACCCGAAAAGCTGGCTGTGCACGAAAAGAACGTTCGAGAATTCGATGCCTTTGTCGAAACCCTGCAGTAA

Related Sequences

XP_004851969.1 Protein

Atg13 PREDICTED: autophagy-related protein 13 isoform X6 [Heterocephalus glaber]

Length: 517 aa      View alignments
>XP_004851969.1
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKISTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALAGQLPAIGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPRHPCIYRIAGEDAGGVYPSVEDSQEVCTTSFSTSPPSQLSSSRLSYLPAVLGLGSADLAYPVVFPAGLNAPHPHQLMVPGKEGGVPVTPSQPTHGAQADQERLATHTLSDGPHCPATPSSSEGTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLTSLDIPFAMFAPKNLELEDTDPMVNPPDSPEAVSPLHGSLHSEGSSEGSSGNPHDDFVMVDFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ