Sequence details NCBI ID: XM_004851856.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Spi1
Gene Name spleen focus forming virus (SFFV) proviral integration oncogene spi1, transcript variant X3
Entrez Gene ID 101707724

Database interlinks

Part of NW_004624767.1 (Scaffold)

For more information consult the page for NW_004624767.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SPI1 ENSCPOG00000022138 (Guinea pig)

Gene Details

spleen focus forming virus (SFFV) proviral integration oncogene

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015005, Guinea pig)

Protein Percentage 89.18%
CDS Percentage 89.55%
Ka/Ks Ratio 0.11679 (Ka = 0.0655, Ks = 0.5608)

SPI1 ENSG00000066336 (Human)

Gene Details

spleen focus forming virus (SFFV) proviral integration oncogene

External Links

Gene Match (Ensembl Protein ID: ENSP00000227163, Human)

Protein Percentage 90.33%
CDS Percentage 89.59%
Ka/Ks Ratio 0.04977 (Ka = 0.0437, Ks = 0.8778)

Sfpi1 ENSMUSG00000002111 (Mouse)

Gene Details

SFFV proviral integration 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002180, Mouse)

Protein Percentage 85.5%
CDS Percentage 85.25%
Ka/Ks Ratio 0.06295 (Ka = 0.0708, Ks = 1.125)

Spi1 ENSRNOG00000012172 (Rat)

Gene Details

spleen focus forming virus (SFFV) proviral integration oncogene (Spi1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016306, Rat)

Protein Percentage 85.87%
CDS Percentage 84.63%
Ka/Ks Ratio 0.05421 (Ka = 0.0691, Ks = 1.2747)

Genome Location

Sequence Coding sequence

Length: 810 bp    Location: 1394718..1404344   Strand: +
Raw sequence   
>XM_004851856.1
ATGTTACAGGCGTGCAAGATGGAAGGGTTTCCCCTCGTCCCCCCTCCGTCGGAAGAGCTGGTTTCCTACGACGCGGACCTGTACCAGCGGCCCCCACACGAGTACTACCCGTACCTGAGCAGCGATGGCGACAGCCACAGCGACCACTACTGGGACTTCCACCCCCACCACGTGCACAGCGAGTTTGAGGCCTTCCCCGAGAACCACTTCACCGAGCTGCAGAGCGTGCAGCCCCCGCAGCTGCAGCAGCTGTACCGCCACATGGAGCTGGAGCAGATGCACGTCCTCGACACCCCCATGGTGCCACCCCACGCCGGCCTTGGCCACCAGGTCCCTTACGTGACCCGGATGTGCGTCCAGTACCCGTCCCTGTCCCCAGCGCAGCCCAGCTCGGATGAGGAGGAGGGCGAGCGGCAGAGCCCCCCGCTGGAGGTGTCCGACGGCGAGAACGATGGCCTGGAGCCTGGGCCCGGCCTCCTGCACGGGGAACCAGGCAGCAAGAAGAAGATCCGCCTGTACCAGTTCCTGCTGGACCTGCTGCGCAGCGGCGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGGGCACCTTCCAGTTCTCGTCGAAGCACAAGGAGGCGCTCGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGACCTACCAGAAGATGGCGCGCGCGCTGCGCAACTACGGCAAGACTGGCGAGGTGCGCAAGGTGAAGAAGAAGCTGACCTACCAGTTCAGCGGCGAGGTGCTGGGCCGCGCGCCTGGGCCTGGCCGCCTGCCGCCACGCTGA

Related Sequences

XP_004851913.1 Protein

Spi1 PREDICTED: transcription factor PU.1 isoform X3 [Heterocephalus glaber]

Length: 269 aa      View alignments
>XP_004851913.1
MLQACKMEGFPLVPPPSEELVSYDADLYQRPPHEYYPYLSSDGDSHSDHYWDFHPHHVHSEFEAFPENHFTELQSVQPPQLQQLYRHMELEQMHVLDTPMVPPHAGLGHQVPYVTRMCVQYPSLSPAQPSSDEEEGERQSPPLEVSDGENDGLEPGPGLLHGEPGSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVRKVKKKLTYQFSGEVLGRAPGPGRLPPR