Sequence details NCBI ID: XM_004851311.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema4d
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D, transcript variant X1
Entrez Gene ID 101712046

Database interlinks

Part of NW_004624765.1 (Scaffold)

For more information consult the page for NW_004624765.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4D ENSCPOG00000007510 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006778, Guinea pig)

Protein Percentage 85.88%
CDS Percentage 83.43%
Ka/Ks Ratio 0.10296 (Ka = 0.0814, Ks = 0.7909)

SEMA4D ENSG00000187764 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

External Links

Gene Match (Ensembl Protein ID: ENSP00000416523, Human)

Protein Percentage 87.59%
CDS Percentage 84.84%
Ka/Ks Ratio 0.09826 (Ka = 0.068, Ks = 0.6923)

Sema4d ENSMUSG00000021451 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021900, Mouse)

Protein Percentage 86.41%
CDS Percentage 82.15%
Ka/Ks Ratio 0.08323 (Ka = 0.0765, Ks = 0.919)

Sema4d ENSRNOG00000013679 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (Sema4d), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018378, Rat)

Protein Percentage 81.88%
CDS Percentage 79.75%
Ka/Ks Ratio 0.11295 (Ka = 0.1111, Ks = 0.9834)

Genome Location

Sequence Coding sequence

Length: 2589 bp    Location: 23097808..23228899   Strand: +
Raw sequence   
>XM_004851311.1
ATGAGGATGTACGGTACCACTGCGGGGCTGCTCTCAGCCCTGGCGCTGGTGTTCGAGGTGGCAGTGGCGTTTTCACCCATACCCCGGATTACCTGGGAACACAGAGAGGTGGGGCTGGTGCAGTTCCATGAGCCTGGGATCTACAACTACTCAGCCCTGCTGATGAGTGAGGACGAGGACATCCTATACGTGGGTGCCCGGGAAGCAGTCTTCGCAGTGAGCGCACTCAATATCTCCTGGAAACAGCACGAGGTGTACTGGGCAGTCTCAGAAGAGAAGAAAGCAAAGTGTGCGGAGAAGGGGAAATCCAAACAGACAGAATGCCTCAACTATATCCGAGTGCTGCAGCCACTCAGCTCCACTTCTCTGTATGTGTGTGGGACCAACGCGTTCCAGCCCACCTGTGACCACCTGAACTTAACGTCCTTTAAGTTTCTGGGGAGAAATGAAGATGGCAAAGGAAGGTGTCCCTTTGACCCAGCGCACAGCTACACATCTGTCATTGTCGATGGAGAGCTATATTCTGGGACATCGTATAATTTTTTAGGAAGCGAACCCATCATCTCCCGAAATTCTTCCCACAGTCCACTGAGAACAGAGTATGCAATCCCTTGGCTGAATGAGCCGAGCTTTGTCTTCGCTGATGTGATCCGAAGAAGCCCAGATGGCGCGGAGGGTGAGGATGACAGGGTCTATTTCTTCTTCACGGAGGTTTCAGTGGAGTATGAGTTTGTATTCAAGTTGATGATCCCACGCATCGCCAGGGTGTGCAAGGGGGACCAGGGTGGCCTGAGGACCCTGCAGAAGAAGTGGACCTCCTTCCTGAAGGCCCGACTGATCTGTTCCTGGCCGGACAGTGGCCTGGTCTTCAACGTGCTGCAGGATGTGTTTGTGCTGCGGACCCCGGGCCTGAAGGAGCCGGTGTTCTACGCACTCTTCACCCCGCAGCTGAACAATGTGGGGCTGTCGGCGGTGTGTGCCTACAACCTGTCCACAGCGGAGGCCGTCTTCTCCCGTGGGAAGTACATGCAGAGTGCCACGGTGGAACAGTCCCACACTAAGTGGGTGCGCTACAATGGCCCAGTGCCCTCTCCTCGGCCTGGAGCGTGCATCAACAGTGAGGCTCGGGCAGCCAACTACACCAGCTCTCTAAACTTACCTGACAAGACGCTGCAGTTTGTCAAAGACCACCCTCTGATGGACGACTCAGTCACTCCAATAGACAACAGGCCTAAGTTGATCAAAAAGGATGTGAACTACACGCAGATCGTGGTGGACAGAGCCCAAGCCCTGGACGGGACCGTGTATGACGTCATGTTTGTCAGTACAGATCGTGGAGCCCTGCACAAAGCTGTGAGCCTCGAGAATGAGGTGCATATCATTGAGGAGACTCAAATTTTCCCAGACTCCGAGCCGGTGCAGACTCTGCTGCTGTCCTCGAAGAAGGGCAGGAGGTTTGTCTATGCTGGCTCCAACTCGGGTGTGGTGCAGGCCCCTCTGGCCTTCTGCAGGAAGCACAGCAGCTGCGAGGACTGTGTACTGGCGCGGGATCCATACTGTGCCTGGAGCCCAACCACAGCTGCCTGCGTCTCTGTACACCAGACCGAGGGCCCCAGCAGGGGGTGGATTCAGGAGATGAGCGGTGATGTGTCCTCGTGCCCGGATAAGGTTAAAGAAAGTTACCGGCAGCATTTTTTCAAGCACGGCGGCATGGCGGAACTCAAATGCTCCCAAAAGTCCAACCTAGCCCGGGTGGTGTGGAAGTTCCAAAACGGTGTGCTGAAGGCTGAGAGCCCTAAGTATGGTCTTGTGGGCAGGAAAAACCTGCTCATCTTCAACCTGTCGGAAGGAGACAGTGGGGTGTACCAGTGCCTGGCAGAGGAGAGGGTCAGGAACAAGACGGTCTCCCAGGTGGTGGCCAAGCACGTGCTGGAGGTGAAGGTCCTCCCTCGGACCCCAGCGGCCCCCACCGCACCAGTCTCTCAGGCAGAAGGAAGCAAGGCCGCCCCCAGGGTGCCTGCAGCGTCTACCCAGGGGTCTTCTCCCCTGACCCCGGCTGTACGGGCCACCTTTCCTGGGGCCATCACCCCGCCTCCCAGGCCCACACCCACCAGCACTTCCTGCGAGCCAAAAGTCGTCATCAACACGGTCCCACAGCTGCACTCGGAGAAGACAATGTATCTCAAGTCCAGCGACAACCGCCTCCTGATGTCCCTCTTGCTCTTCACCTTTGTTCTCTTCCTCTGCCTCTTTTGCTACAATTGTTACAAGGGCTACCTACCTGGGCAGTGCTTAAAATTCCGCTCGGCTCTGCTGCTCGGGAAGAAGAAGCCCAAGCCAGAGTTTTCGGACCTGGAGCAGAGTGTGAAAGAGACGCTAGTGGAGCCCGGCAGCTTCTCCCAGCAGAACGGAGAGCAGCCCAAGCCAGCCCTGGACACCGGCTATGAGACGGAGCAGGATACCATCACCAGCAAAGTCCCCACAGACAGGGAGGACTCGCAGAGGATTGACGAGCTCTCCACCAGGGACAAGCCATTCGATGTGAAGTGTGAACTGAAGTTCGCAGACTCGGATGCAGATGGAGACTGA

Related Sequences

XP_004851368.1 Protein

Sema4d PREDICTED: semaphorin-4D isoform X1 [Heterocephalus glaber]

Length: 862 aa      View alignments
>XP_004851368.1
MRMYGTTAGLLSALALVFEVAVAFSPIPRITWEHREVGLVQFHEPGIYNYSALLMSEDEDILYVGAREAVFAVSALNISWKQHEVYWAVSEEKKAKCAEKGKSKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGRNEDGKGRCPFDPAHSYTSVIVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRRSPDGAEGEDDRVYFFFTEVSVEYEFVFKLMIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSWPDSGLVFNVLQDVFVLRTPGLKEPVFYALFTPQLNNVGLSAVCAYNLSTAEAVFSRGKYMQSATVEQSHTKWVRYNGPVPSPRPGACINSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRAQALDGTVYDVMFVSTDRGALHKAVSLENEVHIIEETQIFPDSEPVQTLLLSSKKGRRFVYAGSNSGVVQAPLAFCRKHSSCEDCVLARDPYCAWSPTTAACVSVHQTEGPSRGWIQEMSGDVSSCPDKVKESYRQHFFKHGGMAELKCSQKSNLARVVWKFQNGVLKAESPKYGLVGRKNLLIFNLSEGDSGVYQCLAEERVRNKTVSQVVAKHVLEVKVLPRTPAAPTAPVSQAEGSKAAPRVPAASTQGSSPLTPAVRATFPGAITPPPRPTPTSTSCEPKVVINTVPQLHSEKTMYLKSSDNRLLMSLLLFTFVLFLCLFCYNCYKGYLPGQCLKFRSALLLGKKKPKPEFSDLEQSVKETLVEPGSFSQQNGEQPKPALDTGYETEQDTITSKVPTDREDSQRIDELSTRDKPFDVKCELKFADSDADGD