Sequence details NCBI ID: XM_004851279.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Jhdm1d
Gene Name jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)
Entrez Gene ID 101699351

Database interlinks

Part of NW_004624765.1 (Scaffold)

For more information consult the page for NW_004624765.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

JHDM1D ENSCPOG00000011219 (Guinea pig)

Gene Details

jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010087, Guinea pig)

Protein Percentage 92.4%
CDS Percentage 93.33%
Ka/Ks Ratio 0.23653 (Ka = 0.0399, Ks = 0.1687)

JHDM1D ENSG00000006459 (Human)

Gene Details

jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000380692, Human)

Protein Percentage 91.82%
CDS Percentage 91.92%
Ka/Ks Ratio 0.1836 (Ka = 0.0412, Ks = 0.2245)

Jhdm1d ENSMUSG00000042599 (Mouse)

Gene Details

jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002305, Mouse)

Protein Percentage 88.72%
CDS Percentage 88.62%
Ka/Ks Ratio 0.17311 (Ka = 0.06, Ks = 0.3469)

Jhdm1d ENSRNOG00000049327 (Rat)

Gene Details

jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066727, Rat)

Protein Percentage 88.97%
CDS Percentage 88.81%
Ka/Ks Ratio 0.16055 (Ka = 0.0572, Ks = 0.3561)

Genome Location

Sequence Coding sequence

Length: 2829 bp    Location: 20448852..20376684   Strand: -
Raw sequence   
>XM_004851279.1
ATGGCCGGAGCGGCGGCGGCGGTGGCCGCGGGAGCAGCAGCTGGAGCGGCCGCGGCAGCCGTGTCGGTGGCGGCTCCAGGCCGGGCCTCGGCGCCTCCGCCGCCCCCGCCCGTGTACTGTGTGTGCCGGCAGCCGTACGACGTGAACCGCTTCATGATCGAGTGCGATATCTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGAGTAGAAGAGCACCATGCTGTTGACATTGACCTGTATCACTGTCCCAACTGTGCACTTCTACATGGCTCCTCCTTGATGAAAAAGAGGAGGAACTGGCACAGGCATGACTACACAGAAATTGATGATGGTTCCAAACCAGTACAAGCTGGAACCAGGACTTTCGTCAAAGAGTTACGTGCTCGAGTCTTCCCAAGTGCCGATGAAATCATTGTGAAGATGCATGGCAGCCAGCTGACACAGAGATACCTGGAGAAACACGGATTTGATGCCCCTATCATGGTCCCTAAATTAGATGACCTAGGACTCAGGCTCCCTCCTCCTGCTTTTTCTGTGTTGGATGTGGAACGTTATGTAGGTGGTGACAAAGTGATAGATGTCATTGATGTGGCAAGGCAGGCAGACAGCAAAATGACACTTCACAATTATGTTAAATACTTCATGAAACCTAACAGACCAAAAGTGTTAAATGTGATCAGCCTTGAATTTTCAGATACAAAAATGTCTGAATTGGTGGAGGTCCCTGATATAGCCAGGAAACTTTCCTGGGTGGAAAACTATTGGCCAGATGATTCAGTCTTTCCCAAGCCATTTGTTCAAAAATACTGCTTAATGGGTGTTCAAGACAGCTACACAGATTTCCACATTGACTTCGGTGGAACATCAGTCTGGTACCATGTCCTCTGGGGTGAGAAGATTTTTTATTTGATAAAGCCAACAAATGAAAATTTGGCACTCTATGAATCTTGGAGTTCATCTGTGACCCAGAGTGAGGTATTCTTTGGCGATAAAGTGGATAAATGCTACAAATGTGTGGTAAAGCAGGGACATACCTTATTTGTTCCTACAGGGTGGATTCATGCCGTGCTCACTTCTCAGGACTGTATGGCTTTTGGGGGTAACTTTCTGCACAACCTTAACATTGGCATGCAGCTCAGGTGTTACGAGATGGAGAAAAGGCTAAAAACACCAGATCTTTTCAAGTTCCCTTTTTTTGAAGCCATATGTTGGTTTGTAGCCAAAAATTTGCTGGAAACCCTGAAAGAACTGAGAGAAGATGGTTTCCAGCCTCAGACTTACCTGGTACAGGGGGTGAAAGCATTGCATACTGCTTTAAAATTATGGATGAAAAAAGAACTTGTATCTGAACATGCCTTTGAAATTCCAGACAATGTTAGACCTGGACATCTTATTAAGGAACTTTCTAAAGTAATTCGAGCAATAGAGGAAGAAAACAGCAAACCAGTTAAATCTCAGGGAATTCCTACTGTGTGTCCAGTTTCACGGTCCTCAATTGAAGCAACTTCCTCGTACCATTCCCGACGGAAGATGAGGAAGCTCCGGGATCACAGTGTTCGAACTCCTTCCAACCTGGACATCCTGGAGCTCCACACGAGGGAAGTCCTCAAGAGACTGGAGATGTGCCCGTGGGAAGAGGACACTTTGAGCTCAAAACTGAATGGAAAATTCAATAAACACCTCCAACCATCTTCCACGGTGCCTGAATGGAGAGCAAAAGATAATGATCTGCGATTACTGCTGACGAATGGAAGAATAATTAAAGACGAGAGGCAGCCCTTTGCAGATCAGAGTCTTTATACAGCAGACAGCGAGAATGAAGAAGATAAGAGAAGGACAAAAAAAGCAAACGTGAAAACAGAAGCAAGTTCAGGAACAGAGGGGATGGAAAGTGAAGAACCTCAGAAACCACTCAACAGGCTTTTTACAAGTGTGAAGTCAGAACTCAGGAATCGATCATCAGAATATTCTGATATTTCTGATTCAGAAGACTCTGGACCTGATTGCACTGCACTGAAAATTAATTTTACCACTGAAGAATCTGAAAGTTCAGGTGATGAAAAGAAACAAGAAGTAACATCAAACTTTAAGGAGGAATCTAATGTGATGAAGAACTTCTTTCAAAAGAGCCAGAAGCCATCTAGAAGTGAAATTCCAATTAAAAGGGAGTGTCCTACCTCCACGAGCACAGAGGAGGAAGCTATTCAGGGCATGCTGTCCATGGCAAGGTTGCACTATTCCACATGTTTACAAAGGCAAATGCAAAGCACAGACTGCAGTGGTGCAAGGAACTCTCCCGAGGATCCCAGTAGCTTCCACAGCAGTAACCACGAGGTTAGGCAGTCGTATCGCTATGATAAACCAGTGGAATATGGATATCATGTCAAGACTCAAGATCAAGACTTGAGGACTTCTTCTTGGATTAAACAAATTGATAGAACTTCCAGATTTAATCCTCAGGATGTAAGCAGAAACCAGAAATGCAACAAAAAGGAAGGTTCATCAGAAACGAGTCAAAAGGTGAAAAGTAGAAACTGTATGGACAGCAATGTCGCAGGCCTTCTGAATGGAAAGTACACACAGAATTCCAGCATGGTTGCAGGTGTATGTCAGATAAACAGCGGCAGCCTGAGCCCAGAGATGCCAGCTGGAGAATCCTCCTTTTCAGTGCCCCTTCACCCCACAAAGAGACCTGCATCAAATCTACCACCTATCAGCAACCAGGCAACAAAAGGCAAACGTCCAAAAAAAGGAATGGCGACAGCCAAACAGCGTCTCGGGAAGATCCTTAAGTTGAACAGAAATGGCCATGCACGGTTCTTTGTGTGA

Related Sequences

XP_004851336.1 Protein

Jhdm1d PREDICTED: lysine-specific demethylase 7 [Heterocephalus glaber]

Length: 942 aa      View alignments
>XP_004851336.1
MAGAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCALLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFVKELRARVFPSADEIIVKMHGSQLTQRYLEKHGFDAPIMVPKLDDLGLRLPPPAFSVLDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMKPNRPKVLNVISLEFSDTKMSELVEVPDIARKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTNENLALYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEENSKPVKSQGIPTVCPVSRSSIEATSSYHSRRKMRKLRDHSVRTPSNLDILELHTREVLKRLEMCPWEEDTLSSKLNGKFNKHLQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKANVKTEASSGTEGMESEEPQKPLNRLFTSVKSELRNRSSEYSDISDSEDSGPDCTALKINFTTEESESSGDEKKQEVTSNFKEESNVMKNFFQKSQKPSRSEIPIKRECPTSTSTEEEAIQGMLSMARLHYSTCLQRQMQSTDCSGARNSPEDPSSFHSSNHEVRQSYRYDKPVEYGYHVKTQDQDLRTSSWIKQIDRTSRFNPQDVSRNQKCNKKEGSSETSQKVKSRNCMDSNVAGLLNGKYTQNSSMVAGVCQINSGSLSPEMPAGESSFSVPLHPTKRPASNLPPISNQATKGKRPKKGMATAKQRLGKILKLNRNGHARFFV