Details from NCBI annotation

Gene Symbol Cald1
Gene Name caldesmon 1, transcript variant X1
Entrez Gene ID 101707480

Database interlinks

Part of NW_004624765.1 (Scaffold)

For more information consult the page for NW_004624765.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CALD1 ENSCPOG00000023504 (Guinea pig)

Gene Details

caldesmon 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018846, Guinea pig)

Protein Percentage 85.34%
CDS Percentage 87.76%
Ka/Ks Ratio 0.30611 (Ka = 0.0929, Ks = 0.3034)

CALD1 ENSG00000122786 (Human)

Gene Details

caldesmon 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000354826, Human)

Protein Percentage 89.56%
CDS Percentage 88.82%
Ka/Ks Ratio 0.12798 (Ka = 0.0538, Ks = 0.4203)

Cald1 ENSMUSG00000029761 (Mouse)

Gene Details

caldesmon 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110673, Mouse)

Protein Percentage 86.45%
CDS Percentage 83.14%
Ka/Ks Ratio 0.11461 (Ka = 0.0874, Ks = 0.7626)

Cald1 ENSRNOG00000010233 (Rat)

Gene Details

caldesmon 1 (Cald1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000043767, Rat)

Protein Percentage 87.24%
CDS Percentage 83.24%
Ka/Ks Ratio 0.09898 (Ka = 0.0827, Ks = 0.8357)

Genome Location

Sequence Coding sequence

Length: 2274 bp    Location: 15261993..15452201   Strand: +
>XM_004851216.1
ATGGATGATTTTGAACGTCGCAGAGAACTCAGGAGACAAAAGAGGGAGGAAATGCGGCTGGAAGCAGAAAGAATCGCCTATCAGAGGAATGACGACGATGAAGAAGAGGCAGCCCGGGAACGGCGCCGCCGAGCCCGACAGGAAAGGTTGCGGCAGAAGCAAGAGGAGGAATCCTTGGGACAGGTGACCGAGCAGGTGGAGGTTCACGCCCAGAACAGTGTCACCGACGAGGAGGCCAAGCCAACTACCACAAACACTCAAGCAGAAGGTGATGAGGAGGCTGCATTACTAGAGCGTCTGGCTCGGAGAGAAGAGCGACGCCAAAAACGTCTTCAGGAAGCCCTAGAGCGGCAGAAGGAGTTTGACCCAACAATAACAGACTCCAGTCTGTCACCACCAAGCCAAAGAATGCAAAACAATATGGCAGAGAACGAGACTACAGAGAAGGAAGAAAAAAGGGAGAGTCGCCAAGAAAGATATGAGATGGAAGAAACAGAGGTTGTCACCAAGTCCTACCAGAAGAATGACTGGAGGGATGCTGAAGACAAAAAGCAAGAAGAAAAAGAAAAGGAGGAAGAGGAAGAAGAGAAGCCAAAGCAAGAGAGCATTGGAGAAAATCAGGTAGAGGTGATGGTAGAAGAGAAAACAACAGAGACTCAAGAGGAAATGGTGATAATGGAGTTAAAAAATGGGCAGATCAGTGCAGAAGAGTCTAAACTAGAGGAGGAGAGGGACCAAGGCTCAGGGGAGATTTCTCATAATGAAAAGATGGAAGAGGAAGAAAGAGAAAGAGCCAAGGCAGAGAGGCTAAGGTTCGAAGCAGAAGAAAGAGAAAGAATTAAAGCTGAGCAAGAAAAAAAGGTAGCAGAAGAGAGAGCAAGAATCGAAGCAGAAGAAAAAGCAGCTGCACAAGAAAGGGAAAGGAGGGAGGCAGAAGAGAGGGAAAAGATCAAGGAGGAAGAGAAAAGGGCTGCCGAGGAGAGAAGGGCAGCAGAGGAGAGAAGGGCAGCAGAGGAGAGAAGGGCAGCAGAGGAGAGGCAGAAAGCCAAGGCAGAGGAGGAGGAAAAGGCTAGGATAGAAGAGCAGAAACAAAAAAAGCAGCTAGAAGAGACAAAAATGAAAGGGGAGAAGGTACAAGAGAAAAGAGAAGGGAGATGGGTAAATGAAAAGAAAGTGCAAGAAGACAAACCTCAGACAGCTGTCCTAAAGAAACAGGAAGAAGAAAGGGGAGCTAAAGGGCAAGCTCAAAGACAAAAGTCCCAAGAAGACAAGCCTGCTTTCAAAAAACAAGAGATCAAAGATGAGAAGATTAAAAAGGACAAGGAGCCCAAAGAAGAAGTTAAGAGCTTCTTGGATCGAAAGAAGGGATTTACAGAAGTGAAGTCACAGAATGGAGAATTCATGACCCACAAACTTAAACACACGGAGAATGCTTTTAGCCGCCCGGGAGGCAGCAAGGAGGCCGAGGGCGCCCCGCAGGTGGAGGCCGGCAGGCGACTGGAGGAGCTGCGGCGCCGGCGCGGGGAGACCGAGAGTGAGGAGTTCGAGAAGCTCAAGCAGAAGCAGCAGGAGGCGGCCCTGGAGCTAGAGGAGCTCAAAAGAAAAAGGGAGGAGCGCAGAAAGGTCCTGGAGGAGGAGGAGCAGAAGAGGAAGCAGGAGGAGGCAGACCGCAAAGCCAGGGAGGAGGAAGAGAAGAGGAGGCTAAAGGAAGAGATTGAGAGGCGAAGGGCAGAAGCTGCTGAGAAACGCCAGAAGATACCGGAAGATGGTTTGTCAGATGATAAGAAGCCATTCAAGTGTTTCACCCCCAAAGGCTCATCTCTCAAGATAGAAGAGCGAGCAGAATTTTTGAATAAGTCTGTGCAGAAAAGCAGTGGTGTCAAATCAGCTCATCAAGCAGCAGTAGTCTCCAAGATTGACAGCCGCCTGGAGCAATACACCAGTGCAATTGAGGGAACAAAAACTGCAAAGCCTACCAAACCAGCAGCCTCGGATCTCCCTGTTCCTGCTGAAGGCGTGCGCAATATCAAGAGCATGTGGGAGAAGGGGAATGTGTTTTCATCCCCCACTGCCTCGGGCACACCAAATAAGGAAACTGCTGGCCTGAAGGTGGGAGTTTCCAGCCGGATCAGTGAGTGGCTAACTAAAACCCCAGATGGGAACAAATTACCTGCTCCCAAACCTTCTGACTTGAGGCCGGGAGACGTATCTGGCAAGCGGAACCTCTGGGAAAAGCAGTCTGTGGATAAGGTTACTTCCCCTACTAAGGTTTGA

Related Sequences

XP_004851273.1 Protein

Cald1 PREDICTED: non-muscle caldesmon isoform X1 [Heterocephalus glaber]

Length: 757 aa      View alignments
>XP_004851273.1
MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTEQVEVHAQNSVTDEEAKPTTTNTQAEGDEEAALLERLARREERRQKRLQEALERQKEFDPTITDSSLSPPSQRMQNNMAENETTEKEEKRESRQERYEMEETEVVTKSYQKNDWRDAEDKKQEEKEKEEEEEEKPKQESIGENQVEVMVEEKTTETQEEMVIMELKNGQISAEESKLEEERDQGSGEISHNEKMEEEERERAKAERLRFEAEERERIKAEQEKKVAEERARIEAEEKAAAQERERREAEEREKIKEEEKRAAEERRAAEERRAAEERRAAEERQKAKAEEEEKARIEEQKQKKQLEETKMKGEKVQEKREGRWVNEKKVQEDKPQTAVLKKQEEERGAKGQAQRQKSQEDKPAFKKQEIKDEKIKKDKEPKEEVKSFLDRKKGFTEVKSQNGEFMTHKLKHTENAFSRPGGSKEAEGAPQVEAGRRLEELRRRRGETESEEFEKLKQKQQEAALELEELKRKREERRKVLEEEEQKRKQEEADRKAREEEEKRRLKEEIERRRAEAAEKRQKIPEDGLSDDKKPFKCFTPKGSSLKIEERAEFLNKSVQKSSGVKSAHQAAVVSKIDSRLEQYTSAIEGTKTAKPTKPAASDLPVPAEGVRNIKSMWEKGNVFSSPTASGTPNKETAGLKVGVSSRISEWLTKTPDGNKLPAPKPSDLRPGDVSGKRNLWEKQSVDKVTSPTKV