Sequence details NCBI ID: XM_004851075.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col16a1
Gene Name collagen, type XVI, alpha 1
Entrez Gene ID 101705401

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL16A1 ENSCPOG00000007157 (Guinea pig)

Gene Details

collagen, type XVI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006454, Guinea pig)

Protein Percentage 91.12%
CDS Percentage 91.02%
Ka/Ks Ratio 0.33897 (Ka = 0.0593, Ks = 0.1749)

COL16A1 ENSG00000084636 (Human)

Gene Details

collagen, type XVI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000362776, Human)

Protein Percentage 87.09%
CDS Percentage 87.52%
Ka/Ks Ratio 0.31867 (Ka = 0.0845, Ks = 0.2651)

Col16a1 ENSMUSG00000040690 (Mouse)

Gene Details

collagen, type XVI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035802, Mouse)

Protein Percentage 85.82%
CDS Percentage 84.95%
Ka/Ks Ratio 0.24352 (Ka = 0.0925, Ks = 0.3797)

Col16a1 ENSRNOG00000031475 (Rat)

Gene Details

collagen, type XVI, alpha 1 (Col16a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000058947, Rat)

Protein Percentage 84.72%
CDS Percentage 84.26%
Ka/Ks Ratio 0.26344 (Ka = 0.1021, Ks = 0.3875)

Genome Location

Sequence Coding sequence

Length: 4284 bp    Location: 14944575..14895867   Strand: -
Raw sequence   
>XM_004851075.1
ATGTGGGTATCCTGGACACCTGGCCTGTGGCTGCTCAGTCTCTGGGTCACCTTCAGCCATGGGGCAAATACAGGTGAGAAGACACAGGATGTCTCTCAGTTTGACCTTCAGCAGGCATACATCTACTGTGACCCAGAGCTTGTGCTAGAAGAGGGCTGTTGTGAGATTTTACCAGGAGGGTGCCCCCCAGAGACCTCTAAGGCCCGCCGGGACACCCAGAGTAATGAGCTCATCGAGATCAATCCTCAGACAGAGGGGAAGGTCTACACCCGCTGCTTCTGCTTGGAAGAGCCTCAAAACAGCAAGGTGGATGCCAAGCTGATGGGAAGAACCAGCCAGAAGGCAGAAAAGGGAACAAAGGTCCTTCGGGAATCAGCAGTTGATGAGTGCCCACCCTGTGTCCACGGCACCCAGGAGAGCAATGTAACACTTGGTCCTTCTGGCTCCAAGGGAGAGACAGGTGAGCGAGGCCTTCCCGGTCCAGCAGGCCCCAAGGGAGAGAAGGGAGCACGGGGCAATGACTGTGTGCTAATCTCCCCGGATGCTCCACTTCAGTGTGCAGAAGGCCCAAAGGGAGAGAAGGGGGTGTCAGGAGCCTCGGGACCATCGGGACTCCCAGGCCCAACAGGCCAGAAGGGCCAGAAAGGCGAGAAGGGCTATGGAGGAATCAAGGGCTTGCCGGGAAAGCCAGGCCGAGATGGCCGGCCAGGAGAGATCTGTGTGATTGGACCCAAAGGGCAGAAAGGAGACCCTGGCTTTGTTGGGCCTGAGGGGCTGGCAGGAGAGCCTGGGCCTCCCGGCCTCCCTGGTCCCCCTGGGATAGGTCTGCCTGGAACCCCTGGGGAGCCAGGTGGCCCACCAGGCCCTAAAGGAGACAAGGGAAGCTCTGGGATTCCAGGCAAGGAAGGCCCTGGTGGGAAGCCTGGGAAGCCAGGAGTGCCAGGGCTGAAGGGAGAGAAGGGTGACCCCTGTGAGGTGTGCCCAACACTGCCTGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAGGGGGAACCAGGGGATCCTGCACCAGTCAGGGGAGACCCTGGCATACAAGGCATCAAAGGAGAGAAGGGGGAGCCCTGCTCACCTTGCACCTTAGTTGCCGAAGCCCAGTATCTTGGCCCCTCGATGGGGGCCCAAGGAGAAGTGGGCTCCTCTGGCTCCAATTTGCCTGGCCTTCTGGAGAAAGCTGGGGCTCCAGGGCCAAGAGGGCTGAAAGGAGAGAAGGGTAATTTTGGGGAGGCAGGGCCAGTCGGCAGTACGGGACCACCAGGGCAGGTTGGACCAGCAGGCTCCAAAGGGGAAAAGGGGGAGCCTTGTGAGCCATGCTCAGCCTTGTCTAAGCCTCAAGATGGGGATAGTCATGTGGTACATTTGCTTGGCCCAGCTGGAGAGAAGGGGGAGCCTGGACCTCCAGGCTTTGGCCTGCCAGGAAAGCAGGGCAAGGCCGGAGAGCGTGGACTGAAGGGGCAGAAGGGTGAGCCTGGGAGTCCTGGAGACCCTGGAAGGCCTGGCACCACGGGGCGGCCAGGACTGTCAGGAGAGCCTGGGGTGCCAGGCCCCTTGGGACCAAAAGGAGAAAAGGGTGATGCCTGTACTGCCTGCCCTAGCCTGCAGGGGGCAGTGACAGACATGACTGGACTGCCTGGGAAGCCTGGCCCCCAAGGAGAGCGAGGCCCAGAAGGAGTAGGCCGGCCAGGTAAACCGGGCAAGCCTGGTCTTCCAGGAGTTCAAGGACCCCCAGGACAGAAGGGCACAGAGGGAGAACCAGGGCCTCCAGGAGTGGGAGCGCAGGGGCCTCAGGGAGAGCCTGGAGCCCAGGGTCTGCCTGGCATTCAGGGACTGCCAGGACCTCGGGGACCACCTGGCCCCACTGGAGAAAAAGGTGCCCAGGGACCTCCAGGGGCAGAAGGAGCCACTGGACCAGTAGGACCTCCTGGTGCCAGCATCTCTGGGCCTCCGGGCCTTGATGGACAGCGAGGAGAGACTGGGCTTCCAGGAGCCAAAGGGATGCCAGGTGAAAAGGGATCTCAAGGAGAGAAGGGAGACCCAGGGGAGTGCTCCTGCCCCTCTCGGGGAGACCCCATCTTCTCTGGCATGCCGGGTGCTCCTGGACTTTGGATGGGCAGCTCCTGGCAGCCGGGCCCGCAGGGCCCCCCAGGTGTCCCTGGACCACCAGGCCCCCCTGGAATGCCTGGGCTGCAGGGATTGCCTGGCATTGACGGTCTGCCAGGACAGCCTGGGCTCACTGCAGAAGTGGGCTCCCTACCCATTGAGCGGCAGCTCCTGAGGAGCATCTGCGGGGACTGTGTCCAGGGCCAGAGAACTGTTGCACTATCCTCCCTAGAAAAGGGAGAGAAGGGAGACCAGGCCATCCCTGGAGTGCCAGGCCTTGACAACTGCGCCCGGTGCTTCTCCCAGCGGGAGCGCCCAAGAGCCGAGGAGGCCAGGGGAGACAACATGGAGAAAGATTCTGATTGTGCTGGGAGCCCCGGCCTGCCTGGTTCTCCAGGGCTGCCCGGCCAGAGAGGAGAAGAGGGTCCACCTGGCATGAGGGGCTCCCCGGGTCCTCCAGGCCCTATTGGCCCCCCAGGTTTTCCTGGTGCTGTTGGCTCCCCTGGATTGCCTGGTCTTCAAGGAGATCGAGGCCTCCAGGGCCTGACAGGTGATAAAGGGGAACCGGGTCCTCCAGGACAGCCTGGTTACCCAGGTGCCATGGGCCCTCCAGGACTACCTGGCATCAAGGGGGAGCGAGGCTACGCCGGGCCAGCAGGAGAGAAGGGGGAGCCGGGCCCACCAGGATCTGAAGGCCTCCCAGGCTCCCCAGGTCCAGTGGGTCCCCAAGGAGAGCGAGGACCCCAAGGGAAATCCGGTGAGAAGGGTGACCAGGGCTTCCAAGGCCAGCCAGGTTTTCCAGGCCCGCCGGGTCCTCCTGGATTCCCAGGCAAAACTGGAGCACCTGGCCCACCTGGTCCCCAGGCAGAGAAGGGCAGTGAAGGAATTCGAGGCCCAACAGGCTTGCCTGGGCCCACCGGGTCACCAGGACCCCCTGGGATTCAGGGACCTGCAGGGCTGGATGGCCTGGACGGGAAGGATGGCAAGCCTGGCATGAGGGGAGACCCTGGTTCTCCTGGCCCCCCTGGACTCATGGGACCCCCAGGTTTCAAAGGGAAAACAGGACATCCTGGCCTCCCAGGACCCAAGGGTGACTGTGGCAAACCAGGTCCCCCTGGCAGCAGTGGCCGGCCAGGTGCAGAGGGTGAGCCTGGTGCCATGGGACCCCAGGGACGACAAGGCTCCCCTGGCCATATTGGGCCTCCAGGGCCTCCAGGCCAGCCTGGTCCAGCTGGGATCTCTGCAGTGGGCCTAAAAGGAGACCGAGGAGCTTCTGGGGAAAGGGGCCCAGCAGGTATTCCAGGCCAGCCCGGCCCACCTGGACACCCTGGCCCCCCGGGTGAACCTGGTACAGATGGTGCCACTGGCAAAGAGGGACTCCCTGGAAAACAGGGACTGTCTGGATTTCCTGGTCCAAAGGGTGATCCAGGACCTACAGGACAGAAGGGCCAGGCAGGAGAGAAGGGGAGATCTGGCATGCCAGGAGGGCCCGGAAAGAGTGGCTCCATGGGGCCTGTTGGGCCACCAGGTCCTGCAGGAGAGAGAGGCCACCCTGGGTCTCCAGGGCCTGCAGGAAGCCCCGGATTGCCTGGTGTGCCCGGCTCCATGGGAGACATGGTGAATTATGATGAAATCAAGAGGTTCATCAGACAAGAGATCATTAAAATGTTTGATGATAGGATGGCTTACTACACTTCCAGGATGCAGTTCCCTGTGGAGATGGCTGCGGCTCCAGGCCGGCCAGGGCCCCCAGGGAAGGAGGGTGCTCCGGGCCGGCCAGGCGCTCCAGGATCACCTGGGCTCCCTGGTCAGATTGGCAGAGAAGGACGGCAGGGCTTGCCAGGAATGAGAGGATTGCCTGGAACCAAAGGTGAAAAGGGGGACATTGGTGTTGGCATTGCAGGAGAAAATGGTCTCCCTGGCCCCCCAGGTCCTCAAGGGCCTCCTGGATATGGCAAGATGGGTACAACAGGGCCAATGGGCCAGCAAGGCATTCCTGGCATCCCTGGTCCCCCCGGCCCTGCAGGCCAGCCAGGGAAGGCTGGGCACTGCAACCCCTCAGACTGCTTTGGGGCCATGCCAATGGAGGAGCAGTACCCACCCATGAAAAACACGAAGGGGCCTTTTGGCTGA

Related Sequences

XP_004851132.1 Protein

Col16a1 PREDICTED: collagen alpha-1(XVI) chain [Heterocephalus glaber]

Length: 1427 aa      View alignments
>XP_004851132.1
MWVSWTPGLWLLSLWVTFSHGANTGEKTQDVSQFDLQQAYIYCDPELVLEEGCCEILPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAKLMGRTSQKAEKGTKVLRESAVDECPPCVHGTQESNVTLGPSGSKGETGERGLPGPAGPKGEKGARGNDCVLISPDAPLQCAEGPKGEKGVSGASGPSGLPGPTGQKGQKGEKGYGGIKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGEPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVPGLKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPVRGDPGIQGIKGEKGEPCSPCTLVAEAQYLGPSMGAQGEVGSSGSNLPGLLEKAGAPGPRGLKGEKGNFGEAGPVGSTGPPGQVGPAGSKGEKGEPCEPCSALSKPQDGDSHVVHLLGPAGEKGEPGPPGFGLPGKQGKAGERGLKGQKGEPGSPGDPGRPGTTGRPGLSGEPGVPGPLGPKGEKGDACTACPSLQGAVTDMTGLPGKPGPQGERGPEGVGRPGKPGKPGLPGVQGPPGQKGTEGEPGPPGVGAQGPQGEPGAQGLPGIQGLPGPRGPPGPTGEKGAQGPPGAEGATGPVGPPGASISGPPGLDGQRGETGLPGAKGMPGEKGSQGEKGDPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGLPGIDGLPGQPGLTAEVGSLPIERQLLRSICGDCVQGQRTVALSSLEKGEKGDQAIPGVPGLDNCARCFSQRERPRAEEARGDNMEKDSDCAGSPGLPGSPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGDRGLQGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGEPGPPGSEGLPGSPGPVGPQGERGPQGKSGEKGDQGFQGQPGFPGPPGPPGFPGKTGAPGPPGPQAEKGSEGIRGPTGLPGPTGSPGPPGIQGPAGLDGLDGKDGKPGMRGDPGSPGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRQGSPGHIGPPGPPGQPGPAGISAVGLKGDRGASGERGPAGIPGQPGPPGHPGPPGEPGTDGATGKEGLPGKQGLSGFPGPKGDPGPTGQKGQAGEKGRSGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDDRMAYYTSRMQFPVEMAAAPGRPGPPGKEGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIGVGIAGENGLPGPPGPQGPPGYGKMGTTGPMGQQGIPGIPGPPGPAGQPGKAGHCNPSDCFGAMPMEEQYPPMKNTKGPFG