Details from NCBI annotation

Gene Symbol Snrnp40
Gene Name small nuclear ribonucleoprotein 40kDa (U5)
Entrez Gene ID 101704694

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNRNP40 ENSCPOG00000004486 (Guinea pig)

Gene Details

small nuclear ribonucleoprotein 40kDa (U5)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004046, Guinea pig)

Protein Percentage 97.24%
CDS Percentage 92.54%
Ka/Ks Ratio 0.0844 (Ka = 0.0221, Ks = 0.2617)

SNRNP40 ENSG00000060688 (Human)

Gene Details

small nuclear ribonucleoprotein 40kDa (U5)

External Links

Gene Match (Ensembl Protein ID: ENSP00000263694, Human)

Protein Percentage 97.54%
CDS Percentage 90.36%
Ka/Ks Ratio 0.04691 (Ka = 0.0189, Ks = 0.4032)

Snrnp40 ENSMUSG00000074088 (Mouse)

Gene Details

small nuclear ribonucleoprotein 40 (U5)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101616, Mouse)

Protein Percentage 96.32%
CDS Percentage 86.2%
Ka/Ks Ratio 0.03717 (Ka = 0.0249, Ks = 0.6708)

Snrnp40 ENSRNOG00000012219 (Rat)

Gene Details

small nuclear ribonucleoprotein 40 (U5) (Snrnp40), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016325, Rat)

Protein Percentage 96.93%
CDS Percentage 86.2%
Ka/Ks Ratio 0.03215 (Ka = 0.022, Ks = 0.6843)

Genome Location

Sequence Coding sequence

Length: 981 bp    Location: 14649771..14620494   Strand: -
>XM_004851074.1
ATGATAGAACAGCAGAAGCGCAAGGCCCCGGAGTTGCCACTGGTTCCAGTCAAGCGGCAGCGACATGAGTTGCTCCTGGCAGCGGCGGGGTCAGGCCCCGGAGCAGGGCAGCAGCAGGCGACCCCGGGAGCTTTACTTCAAGCGGGACCTCCAAGGTGTTCCTCCCTTCAAGCCCCAATCATGCTACTCTCAGGACATGAAGGAGAAGTGTACTGCTGCAAGTTTCACCCCAATGGCTCCACCTTGGCATCTGCAGGATTTGACCGATTGATACTGCTGTGGAATGTCTATGGTGACTGTGATAATTATGCCACACTGAAAGGACATAGTGGAGCAGTGATGGAGCTCCATTATAACACAGATGGCAGTATGCTCTTCTCCGCATCCACAGATAAAACTGTGGCAGTATGGGATAGTGAAACAGGCGAAAGGGTTAAAAGGCTGAAGGGACATACTTCCTTTGTAAATTCCTGTTACCCAGCCAGGAGGGGACCCCAGCTTGTCTGCACTGGCAGCGATGATGGTACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGCTATCCAGACGTTTCAAAACACATACCAGGTATTAGCTGTGACCTTTAATGACACAAGTGATCAGATTATCTCTGGTGGAATAGACAATGATATAAAGATGACTAAGGTAAGGTCCCAAGAGGTGCGTGTCTGGGATGTCCGTCCATTTGCCCCTAAAGAGAGGTGTGTAAAGATATTTCAAGGAAATGTGCATAACTTTGAAAAGAATCTCCTGAGATGTTCTTGGTCACCTGATGGGAGCAAAATAGCAGCTGGCTCAGCGGACAGGTTTGTGTATGTGTGGGACACCACAAGCAGGAGAATACTGTATAAGCTGCCTGGCCATGCTGGCTCCATCAATGAAGTAGCTTTCCATCCTGATGAGCCCATCATTCTCTCAGCATCTAGTGACAAGAGACTGTATATGGGGGAGATTCAGTGA

Related Sequences

XP_004851131.1 Protein

Snrnp40 PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Heterocephalus glaber]

Length: 326 aa      View alignments
>XP_004851131.1
MIEQQKRKAPELPLVPVKRQRHELLLAAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKMTKVRSQEVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ