Sequence details NCBI ID: XM_004850826.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pef1
Gene Name penta-EF-hand domain containing 1, transcript variant X3
Entrez Gene ID 101705661

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PEF1 ENSCPOG00000007151 (Guinea pig)

Gene Details

penta-EF-hand domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006448, Guinea pig)

Protein Percentage 96.69%
CDS Percentage 93.63%
Ka/Ks Ratio 0.0802 (Ka = 0.0166, Ks = 0.2065)

PEF1 ENSG00000162517 (Human)

Gene Details

penta-EF-hand domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000362807, Human)

Protein Percentage 94.51%
CDS Percentage 91.33%
Ka/Ks Ratio 0.0886 (Ka = 0.0269, Ks = 0.3033)

Pef1 ENSMUSG00000028779 (Mouse)

Gene Details

penta-EF hand domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000112638, Mouse)

Protein Percentage 85.19%
CDS Percentage 83.95%
Ka/Ks Ratio 0.17213 (Ka = 0.0913, Ks = 0.5305)

Pef1 ENSRNOG00000013972 (Rat)

Gene Details

penta-EF hand domain containing 1 (Pef1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018742, Rat)

Protein Percentage 86.08%
CDS Percentage 85.71%
Ka/Ks Ratio 0.16648 (Ka = 0.0773, Ks = 0.4646)

Genome Location

Sequence Coding sequence

Length: 822 bp    Location: 14889157..14872646   Strand: -
Raw sequence   
>XM_004850826.1
ATGGCAAGTTATCCGTACGGGCAGGGCTGCCCAGGAGCTGCAGGACAGGCACCTGGAGCCCCTCCAGGCAGCTACTACCCAGGACCTCCCCATGGTGGAGGACAGTATGGCGGTGGTTATGGAGGTCCTGCCCCCGGAGGGCCTTATGGACCACCAGCTGGTGGAGGGCCCTATGGACATCCCAGTGCTGGAACTCCAGGGGGACCCTACGGTGGTGCAGCTCCAGGGGGTCCTTATGGTCAGCCACCTCCAAGTTCCTATGGTGCACAGCAGCCTGGACCTTATGGACAAGGTGGCACTCCTCTCAATGTGGATCCTGAAGCCTACTCCTGGTTCCAGTCTGTGGACTCTGATCGCAGTGGCTACATCTCCATCAAGGAACTGAAGCAGGCTCTGGTCAACTCCAACTGGTCCTCATTCAATGACGAGACATGCCTCATGATGATAAACATGTTTGACAAGACCAAGTCAGGCCACATTGATGTCTACGGTTTCTCAGCCCTATGGAAATTCATCCAGCAGTGGAAGAACCTCTTCCAGCAGTATGACCGGGACCACTCAGGCTCCATCAGCTACACGGAGCTGCAGCAAGCTCTGTCCCAAATGGGCTACAACCTGAGCCCTCAGTTCACCCAGCTCCTGGTCTCCCGCTACTGCCCTCGCTCTGCCAATCCTGCCATGCAGCTCGACCGCTTCATCCAGGTGTGCACCCAGCTTCAGTTGTTGACTGAAGCCTTTCGGGAGAAGGACGCCGCTGTACAGGGCAACATTCGGCTCAGCTTCGAGGACTTTGTCACCATGACAGCCTCTCGGATGCTATGA

Related Sequences

XP_004850883.1 Protein

Pef1 PREDICTED: peflin isoform X3 [Heterocephalus glaber]

Length: 273 aa      View alignments
>XP_004850883.1
MASYPYGQGCPGAAGQAPGAPPGSYYPGPPHGGGQYGGGYGGPAPGGPYGPPAGGGPYGHPSAGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGPYGQGGTPLNVDPEAYSWFQSVDSDRSGYISIKELKQALVNSNWSSFNDETCLMMINMFDKTKSGHIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQLLTEAFREKDAAVQGNIRLSFEDFVTMTASRML