Sequence details NCBI ID: XM_004850792.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptpru
Gene Name protein tyrosine phosphatase, receptor type, U, transcript variant X6
Entrez Gene ID 101725279

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTPRU ENSCPOG00000000424 (Guinea pig)

Gene Details

protein tyrosine phosphatase, receptor type, U

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000374, Guinea pig)

Protein Percentage 97.77%
CDS Percentage 93.35%
Ka/Ks Ratio 0.02922 (Ka = 0.0098, Ks = 0.3368)

PTPRU ENSG00000060656 (Human)

Gene Details

protein tyrosine phosphatase, receptor type, U

External Links

Gene Match (Ensembl Protein ID: ENSP00000334941, Human)

Protein Percentage 96.16%
CDS Percentage 90.79%
Ka/Ks Ratio 0.03126 (Ka = 0.0171, Ks = 0.5461)

Ptpru ENSMUSG00000028909 (Mouse)

Gene Details

protein tyrosine phosphatase, receptor type, U

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030741, Mouse)

Protein Percentage 94.84%
CDS Percentage 88.17%
Ka/Ks Ratio 0.03424 (Ka = 0.0246, Ks = 0.7187)

Ptpru ENSRNOG00000013515 (Rat)

Gene Details

protein tyrosine phosphatase, receptor type, U (Ptpru), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000030956, Rat)

Protein Percentage 94.91%
CDS Percentage 88.12%
Ka/Ks Ratio 0.03394 (Ka = 0.0246, Ks = 0.7247)

Genome Location

Sequence Coding sequence

Length: 4323 bp    Location: 12994612..13072718   Strand: +
Raw sequence   
>XM_004850792.1
ATGGCCCGCGCCCAGGCGCTCGTCCTGGTGCTCACCTTCCAGCTCTGCGCGCCCGAGACCGAGACTCCGGCAGCTGGCTGCACCTTTGAAGAGACGAGTGACCCAGCAGTGCCCTGTGAGTACAGCCAGGCTCAGTATGATGACTTCCAGTGGGAGCAAGTGTGGATCCACCCTGGCACCCGGGCCCCTTCGGATCTCCCCCATGGTGCCTACTTGATGGTCAACGCTTCGCAGCATGCCTCAGGCCAGCGGGCCCATGTCATCTTTCAGAGCCTGAGTGAGAACGACACCCACTGTGTGCAGTTCAGCTACTTCCTATACAGCCGGGACGGGCACAGCCCTGGCACCCTGGGTGTCTATGTGCGTGTTAATGGAGGCCCCCTGGGCAGCACTGTCTGGAATATGACCGGATCCCAGGGCCGTCAGTGGCACCAGGCTGAGCTGGCTGTCAGCACCTTCTGGCCCAATGAATATCAGGTGCTGTTTGAGTCCTTCATCTCCCCTGACCGAAGGGGCTACATGGGCCTAGATGACATCTTGCTTTTCAGCTACCCTTGTGCAAAGGCCCCGCACTTCTCCCGCCTGGGTGACGTGGAGGTCAATGCTGGGCAGAACGCATCGTTCCAGTGCATGGCGGCAGGACGAGCAGCCGAGGCAGAGCGCTTCCTCCTCCAGCGGCAGAGCGGGGCTCTGGTGCCCGCGGCCACTGTGCGTCACATCAGCCATCGGCGCTTCCTGGCCACTTTCACGCTGCCCGCCGTGGGCCGCGCGGAGCAAGACCTGTACCGCTGCGTGTCCCAAGCCCCGCGCGGCACTGGTGTCTCCAACTTCGCTGAGCTCATCGTCAAGGAGCCCCCCACTCCCATCGCACCCCCACAGCTGCTGCGTGCGGGCCCTACCTACCTCATCATCCAGCTGAACACCAATTCCATCATCGGTGATGGGCCGATTGTGCGCAAGGAGATCGAGTATCGCATGGCCCGTGGACCCTGGGCCGAGGTGCATGCTGTCAGCCTGCAGACCTACAAGCTGTGGCACCTCGACCCTGACACAGAGTATGAGATCAGCGTGCTGCTCACCCGCCCAGGGGATGGGGGCACTGGCCGCCCTGGGCCACCACTCCTCAGCCGCACGAAGTGTGCAGAGCCCATGAGGGCCCCCAAAGGCCTGGCTTTCGCTGAGATCCAGGCTCGCCAGCTGACCCTGCAGTGGGAGCCCCTGGGGTACAACGTGACACGTTGCCACACCTACACTGTGTCCCTTTGCTATCACTACACCCCGGGCAGCAACCACAACCAGACCATCCGTGAATGTGTGAAGATGGAGCGGGGTGCCAGCCGCTACACCATCCGGAACCTGCTACCTTACCGCAACGTTCACGTGCGCCTGGTCCTCACCAACCCCGAGGGCCGCAAGGAGGGCAAGGAGGTCACCTTCCAGACCGACGAGGACGTGCCTGGTGGGATTGCAGCTGAGTCCTTGACCTTCACACCACTGGAGGATATGATCTTCCTCAAATGGGAGGAGCCCCAGGAGCCTAATGGCCTCATCACCCAGTACGAGATCAGCTACCAGAGCATTGAATCGTCAGACCCAGCGGTGAACGTGCCGGGCCCGAGGCGTACCATCTCCAAGCTCCGAAACGAGACCTACCATGTCTTCTCCAACCTGCACCCAGGCACCACCTACCTGTTCTCCGTGCGAGCCCGCACAGGCAAAGGCTTCGGCCAGGCAGCACTCACCGAGATCACCACCAACATCTCAGCTCCGAGCTTTGATTATGCCGACATGCCGTCGCCCCTGGGCGAGTCTGAGAACACCATCACCGTGCTGCTGAGGCCGGCACAGGGCCGAGGTGCACCCATCAGTGTGTACCAGGTGATTGTGGAGGAAGAACGGCCAAGGAGGTTGCGGCGGGAGCCAGGTGGCCAGGACTGCTTCCCAGTGCCTCTGACCTTCGAGGTGGCACTAGCTCGTGGCCTAGTGCACTACTTTGGGGCTGAACTGGTGGCCAGCAGCCTGCCTGAGGCCATGCCCTTCACGGTGGGTGACAACCAGACATATCGTGGCTTCTGGAACCCACCACTTGAGCCCAGGAAGTCCTATCTCATCTACTTCCAGGCAGCAAGCCATCTGAAAGGGGAGACCCGGCTGAATTGCATTCGAATTGCCAGGAAAGCTGCCTGCAAGGAAAGCAAGAGGCCCCTAGAGGTGTCCCAGAAATCAGAGGAGATGGGGCTCATCCTGGGCATCTGTGCAGGGGGACTTGCGGTCCTTATCCTGCTCCTGGGGGCCATCATTGTCATCATTCGAAAGGGGAAGCCTGTGAACATGGCTAAGGCCACTGTCAACTACCGCCAGGAGAAGACACACATGATGAGTGCTGTAGACCGGAGCTTCACAGACCAGAGCACTCTGCAGGAGGATGAGCGGCTGGGCCTGTCCTTCATGGATGCACCAGGCTACAGCCCCAGGGGAGACCAGCGCAGCGCTGGGGTCACAGAGGCCAGCAGTCTCCTGGGGGGCTCGCCGCGGCGTCCGTGTGGCCGGAAGGGCTCTCCTTATCACACGGGCCAGCTGCATCCTGCAGTCCGCGTAGCAGACCTTCTGCAGCACATCAACCAAATGAAGACGGCTGAGGGCTATGGCTTCAAGCAGGAGTATGAGAGCTTCTTTGAGGGCTGGGATGCCACAAAGAAGAAAGACAAGCTCGAGGGTGGCCGGCAGGGATCGATGCCTGCTTATGATCGGCACCGAGTGAAACTGCACCCGATGCTGGGAGACCCCAATGCTGACTACATTAATGCCAACTACATAGACATTCGGATAAATCGCCAAGGTTATCACAGATCAAATCACTTCATAGCCACTCAAGGGCCGAAGCCCGAGATGATCTACGATTTCTGGCGTATGGTGTGGCAGGAGCACTGCTCCAGCATCGTCATGATCACCAAGCTGGTAGAGGTGGGCAGGGTGAAGTGCTCACGGTACTGGCCAGAGGACTCAGACATGTATGGGGACATCAAGATCACACTGATGAAGACAGAAACATTGGCCGAGTATGTTGTGCGCACTTTTGCCCTGGAGCGGCGAGGCTACTCTGCCCGGCATGAGGTCCGCCAGTTCCACTTCACAGCATGGCCAGAGCATGGTGTCCCCTACCATGCCACTGGGCTGTTGGCCTTCATCCGGCGTGTCAAGGCCTCCACACCACCGGATGCTGGGCCTGTGGTCATCCACTGCAGCGCGGGCACTGGCCGCACAGGCTGCTACATCGTCCTGGATGTGATGCTGGACATGGCGGAGTGTGAGGGTGTTGTGGACATTTACAACTGCGTGAAGACCCTATGCTCCCGGCGTGTCAACATGATTCAGACCGAGGAGCAGTACATCTTCATCCATGATGCAATCCTGGAGGCCTGTCTGTGTGGGGAGACCACCATCCCTGTCAATGAGTTCAAGGCTACGTACAGGGAGATGATCCGCATTGACCCTCAGAGTAATTCTTCCCAGCTGCGGGAAGAATTCCAGACGCTGAACTCGGTCACTCCACCACTGGACATGGAGGAATGCAGCATCGCCTTGCTGCCACGGAACCGTGACAAGAACCGAAGCATGGATGTCCTGCCACCAGACCGCTGCCTACCCTTCCTTGTCTCTACTGACGGTGACCCCAACAACTACATCAATGCGGCCCTGACTGACAGCTACACGCGGAGTGCGGCCTTCATCGTGACCCTACATCCGCTGCAGAGCACCATGCCTGACTTCTGGCGGCTGGTCTACGACTATGGGTGCACCTCCATCGTTATGCTCAACCAGTTGAACCAGTCCAACTCGGCCTGGCCCTGCCTGCAGTACTGGCCAGAGCCAGGTCGGCAGCAGTATGGCCTCATGGAGGTGGAGTTTGTGTCTGGCACAGCAGATGAAGACTTGGTGGCCCGAGTCTTCCGGGTGCAGAACATCTCTCGGGAGGGCCACCTGCTGGTGCGGCACTTCCAGTTCCTGCGCTGGTCTGCCTACCGTGACACGCCTGACTCCAAGAAGGCTTTCCTGCACCTGCTGGCCGAGGTGGACAAGTGGCAGGCAGAGAGCGGGGACGGGCGCACCGTTGTGCACTGCCTAAACGGGGGTGGCCGCAGCGGCACCTTCTGCGCCTGCGCCACGGTCCTGGAGATGATCCGATGCCACAGCCTAGTGGATGTTTTCTTTGCTGCCAAAACCCTCCGGAACTACAAGCCCAACATGGTGGAGACCATGGATCAGTACCACTTTTGCTACGATGTGGCCCTGGAGTACCTGGAAGGGCTGGAGTCAAGATAG

Related Sequences

XP_004850849.1 Protein

Ptpru PREDICTED: receptor-type tyrosine-protein phosphatase U isoform X6 [Heterocephalus glaber]

Length: 1440 aa      View alignments
>XP_004850849.1
MARAQALVLVLTFQLCAPETETPAAGCTFEETSDPAVPCEYSQAQYDDFQWEQVWIHPGTRAPSDLPHGAYLMVNASQHASGQRAHVIFQSLSENDTHCVQFSYFLYSRDGHSPGTLGVYVRVNGGPLGSTVWNMTGSQGRQWHQAELAVSTFWPNEYQVLFESFISPDRRGYMGLDDILLFSYPCAKAPHFSRLGDVEVNAGQNASFQCMAAGRAAEAERFLLQRQSGALVPAATVRHISHRRFLATFTLPAVGRAEQDLYRCVSQAPRGTGVSNFAELIVKEPPTPIAPPQLLRAGPTYLIIQLNTNSIIGDGPIVRKEIEYRMARGPWAEVHAVSLQTYKLWHLDPDTEYEISVLLTRPGDGGTGRPGPPLLSRTKCAEPMRAPKGLAFAEIQARQLTLQWEPLGYNVTRCHTYTVSLCYHYTPGSNHNQTIRECVKMERGASRYTIRNLLPYRNVHVRLVLTNPEGRKEGKEVTFQTDEDVPGGIAAESLTFTPLEDMIFLKWEEPQEPNGLITQYEISYQSIESSDPAVNVPGPRRTISKLRNETYHVFSNLHPGTTYLFSVRARTGKGFGQAALTEITTNISAPSFDYADMPSPLGESENTITVLLRPAQGRGAPISVYQVIVEEERPRRLRREPGGQDCFPVPLTFEVALARGLVHYFGAELVASSLPEAMPFTVGDNQTYRGFWNPPLEPRKSYLIYFQAASHLKGETRLNCIRIARKAACKESKRPLEVSQKSEEMGLILGICAGGLAVLILLLGAIIVIIRKGKPVNMAKATVNYRQEKTHMMSAVDRSFTDQSTLQEDERLGLSFMDAPGYSPRGDQRSAGVTEASSLLGGSPRRPCGRKGSPYHTGQLHPAVRVADLLQHINQMKTAEGYGFKQEYESFFEGWDATKKKDKLEGGRQGSMPAYDRHRVKLHPMLGDPNADYINANYIDIRINRQGYHRSNHFIATQGPKPEMIYDFWRMVWQEHCSSIVMITKLVEVGRVKCSRYWPEDSDMYGDIKITLMKTETLAEYVVRTFALERRGYSARHEVRQFHFTAWPEHGVPYHATGLLAFIRRVKASTPPDAGPVVIHCSAGTGRTGCYIVLDVMLDMAECEGVVDIYNCVKTLCSRRVNMIQTEEQYIFIHDAILEACLCGETTIPVNEFKATYREMIRIDPQSNSSQLREEFQTLNSVTPPLDMEECSIALLPRNRDKNRSMDVLPPDRCLPFLVSTDGDPNNYINAALTDSYTRSAAFIVTLHPLQSTMPDFWRLVYDYGCTSIVMLNQLNQSNSAWPCLQYWPEPGRQQYGLMEVEFVSGTADEDLVARVFRVQNISREGHLLVRHFQFLRWSAYRDTPDSKKAFLHLLAEVDKWQAESGDGRTVVHCLNGGGRSGTFCACATVLEMIRCHSLVDVFFAAKTLRNYKPNMVETMDQYHFCYDVALEYLEGLESR