Sequence details NCBI ID: XM_004850246.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cthrc1
Gene Name collagen triple helix repeat containing 1
Entrez Gene ID 101723358

Database interlinks

Part of NW_004624763.1 (Scaffold)

For more information consult the page for NW_004624763.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CTHRC1 ENSCPOG00000012284 (Guinea pig)

Gene Details

collagen triple helix repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011047, Guinea pig)

Protein Percentage 85.31%
CDS Percentage 80.95%
Ka/Ks Ratio 0.06504 (Ka = 0.0798, Ks = 1.2264)

CTHRC1 ENSG00000164932 (Human)

Gene Details

collagen triple helix repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000330523, Human)

Protein Percentage 87.65%
CDS Percentage 76.82%
Ka/Ks Ratio 0.05837 (Ka = 0.0834, Ks = 1.4295)

Cthrc1 ENSMUSG00000054196 (Mouse)

Gene Details

collagen triple helix repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000070018, Mouse)

Protein Percentage 86.83%
CDS Percentage 78.19%
Ka/Ks Ratio 0.06429 (Ka = 0.0841, Ks = 1.3075)

Cthrc1 ENSRNOG00000004578 (Rat)

Gene Details

collagen triple helix repeat containing 1 (Cthrc1), transcript variant 1, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006142, Rat)

Protein Percentage 87.24%
CDS Percentage 77.5%
Ka/Ks Ratio 0.05488 (Ka = 0.0809, Ks = 1.4744)

Genome Location

Sequence Coding sequence

Length: 738 bp    Location: 19917217..19925824   Strand: +
Raw sequence   
>XM_004850246.1
ATGCGCCCCCCACAGCCCGCGGCCCTGCGCCCCCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCACACGCCCTCGCCGTCGGATGCCGCCGAGGACCCCCGGCCGAAGGCGAAGGCGCAGATCCGGCAGCGGGAGGTGGTGGACCTGTACAACGGGCTGGGCAACTGCCTGCAGGGTCCAGCCGGGGTGCCCGGTCGAGATGGCAGCCCCGGGGCCAATGGCATCCCTGGCACCCCTGGGATCCCCGGCCGGGACGGGTTCAAAGGAGAGAAGGGGGAGTGCCTGAGGGAGAGCCTGGAGGAGCCCTGGACCCCCAACTACAAGCAGTGCTCCTGGAGTTCGCTGAACTACGGCATAGATCTCGGAAAGATTGCAGAGTGCACCTTCGCCAAGACGCGCGCCCGCAGCGCGCTGCGCGTCCTGTTCAGCGGCTCGCTGCGGCTCAAGTGCAGGGGCGCCTGCTGCCAGCGCTGGTATTTCACCTTCAACGGGGCCGAGTGCGCGGGGCCGCTCCCCATCGAAGCCATCGTTTACCTGGATCAGGGAAGCCCGGAGCTGAACTCGACAATTAACATCCACCGCACCTCCTCCGTGGAAGGACTCTGCGAAGGGATCAGCGCTGGCCTCGTGGATGTCGCCATCTGGGTTGGGACCTGCTCCGATTACCCCAAAGGAGATGCTTCCACGGGGTGGAATTCAGTGTCTCGCATCATTATCGAAGAACTCCCCAAATAA

Related Sequences

XP_004850303.1 Protein

Cthrc1 PREDICTED: collagen triple helix repeat-containing protein 1 [Heterocephalus glaber]

Length: 245 aa      View alignments
>XP_004850303.1
MRPPQPAALRPLLLLLLLLLLLHTPSPSDAAEDPRPKAKAQIRQREVVDLYNGLGNCLQGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESLEEPWTPNYKQCSWSSLNYGIDLGKIAECTFAKTRARSALRVLFSGSLRLKCRGACCQRWYFTFNGAECAGPLPIEAIVYLDQGSPELNSTINIHRTSSVEGLCEGISAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK