Details from NCBI annotation

Gene Symbol Pabpc1
Gene Name poly(A) binding protein, cytoplasmic 1, transcript variant X2
Entrez Gene ID 101721124

Database interlinks

Part of NW_004624763.1 (Scaffold)

For more information consult the page for NW_004624763.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PABPC3 ENSCPOG00000012917 (Guinea pig)

Gene Details

poly(A) binding protein, cytoplasmic 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011629, Guinea pig)

Protein Percentage 99.82%
CDS Percentage 97.6%
Ka/Ks Ratio 0.00811 (Ka = 0.0008, Ks = 0.0989)

PABPC1 ENSG00000070756 (Human)

Gene Details

poly(A) binding protein, cytoplasmic 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000313007, Human)

Protein Percentage 99.84%
CDS Percentage 97.42%
Ka/Ks Ratio 0.00624 (Ka = 0.0007, Ks = 0.1131)

Genome Location

Sequence Coding sequence

Length: 1902 bp    Location: 7567918..7552941   Strand: -
>XM_004850170.1
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTACACCCCGACGTGACCGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCTACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATTTGGACAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCCTGTAAGGTGGTTTGTGATGAAAATGGTTCCAAGGGCTATGGATTTGTTCATTTTGAGACGCAGGAAGCTGCTGAAAGAGCTATTGAAAAAATGAATGGAATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCAGAACTTGGAGCTAGGGCAAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGACCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTGAGCTTTGAAAGGCATGAAGATGCACAGAAAGCTGTGGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACGCCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTGTTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGATTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAATGGTAGAATTGTGGCCACCAAGCCACTCTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCGAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAGAATATGCCCGGTGCTATCCGCCCAGCCGCTCCTAGACCACCATTTAGCACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAGCGTGTTGCAAACACGTCAACACAGACAATGGGTCCACGTCCTGCAGCTGCTGCCGCTGCTGCTACTCCTGCTGTCCGCACCGTTCCCCAGTATAAATACGCTGCGGGAGTCCGCAATCCTCAGCAGCATCTTAATACACAGCCACAGGTTACCATGCAACAGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCCCCCCAAGAGCAAAAGCAAATGTTGGGTGAACGGCTGTTTCCACTTATTCAAGCCATGCACCCCACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTCACATGCTTGAGTCTCCAGAGTCTCTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACTGGAGTTCCAACTGTCTAA

Related Sequences

XP_004850227.1 Protein

Pabpc1 PREDICTED: polyadenylate-binding protein 1 isoform X2 [Heterocephalus glaber]

Length: 633 aa      View alignments
>XP_004850227.1
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV