Sequence details NCBI ID: XM_004849688.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hopx
Gene Name HOP homeobox, transcript variant X3
Entrez Gene ID 101719598

Database interlinks

Part of NW_004624761.1 (Scaffold)

For more information consult the page for NW_004624761.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HOPX ENSCPOG00000024011 (Guinea pig)

Gene Details

HOP homeobox

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016651, Guinea pig)

Protein Percentage 98.63%
CDS Percentage 93.15%
Ka/Ks Ratio 0.00765 (Ka = 0.0054, Ks = 0.6995)

HOPX ENSG00000171476 (Human)

Gene Details

HOP homeobox

External Links

Gene Match (Ensembl Protein ID: ENSP00000450527, Human)

Protein Percentage 70.83%
CDS Percentage 73.61%
Ka/Ks Ratio 0.02376 (Ka = 0.2097, Ks = 8.8247)

Hopx ENSMUSG00000059325 (Mouse)

Gene Details

HOP homeobox

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000080630, Mouse)

Protein Percentage 91.78%
CDS Percentage 89.95%
Ka/Ks Ratio 0.05319 (Ka = 0.0349, Ks = 0.6555)

Hopx ENSRNOG00000024689 (Rat)

Gene Details

HOP homeobox (Hopx), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000044357, Rat)

Protein Percentage 91.78%
CDS Percentage 90.87%
Ka/Ks Ratio 0.05517 (Ka = 0.0335, Ks = 0.6073)

Genome Location

Sequence Coding sequence

Length: 222 bp    Location: 12799481..12806933   Strand: +
Raw sequence   
>XM_004849688.1
ATGTCGGCAGAGCCCACGAGCGGCCCCACGGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAACAAGCATCCAGACCCCACCACGCTGTGCCTCATCGCGGCCGAGGCGGGCCTCTCGGAGGAGGAGACCCAGAAATGGTTTAAGCAGCGCCTGGCCCAATGGCGGAGGTCGGAAGGCCTACCTTCAGAGTGCAGATCCGTCACGGACTGA

Related Sequences

XP_004849745.1 Protein

Hopx PREDICTED: homeodomain-only protein isoform X3 [Heterocephalus glaber]

Length: 73 aa      View alignments
>XP_004849745.1
MSAEPTSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLSEEETQKWFKQRLAQWRRSEGLPSECRSVTD