Details from NCBI annotation

Gene Symbol Prpf4
Gene Name PRP4 pre-mRNA processing factor 4 homolog (yeast)
Entrez Gene ID 101704811

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF4 ENSCPOG00000010747 (Guinea pig)

Gene Details

pre-mRNA processing factor 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009648, Guinea pig)

Protein Percentage 99.22%
CDS Percentage 95.79%
Ka/Ks Ratio 0.0231 (Ka = 0.0037, Ks = 0.1591)

PRPF4 ENSG00000136875 (Human)

Gene Details

pre-mRNA processing factor 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000363313, Human)

Protein Percentage 98.85%
CDS Percentage 92.64%
Ka/Ks Ratio 0.01712 (Ka = 0.0054, Ks = 0.317)

Prpf4 ENSMUSG00000066148 (Mouse)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000081572, Mouse)

Protein Percentage 98.66%
CDS Percentage 91.17%
Ka/Ks Ratio 0.022 (Ka = 0.0083, Ks = 0.3784)

Prpf4 ENSRNOG00000014777 (Rat)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog (yeast) (Prpf4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019910, Rat)

Protein Percentage 98.85%
CDS Percentage 91.68%
Ka/Ks Ratio 0.0148 (Ka = 0.0055, Ks = 0.3691)

Genome Location

Sequence Coding sequence

Length: 1566 bp    Location: 21820402..21805035   Strand: -
>XM_004849540.1
ATGGCTTCTTCACGCGCCTCCTCCACGGCAACCAAAACTAAAGCACCTGATGACTTAGTCGCTCCCGTTGTGAAGAAACCACACATCTATTATGGAAGTTTGGAAGAGAAGGAAAGGGAACGCCTCGCCAAGGGAGAGTCTGGGATTTTGGGAAAAGAAGGACTTAAAGCAGGCATTGAAGCAGGAAATATTAATATAACTTCTGGAGAAGTATTTGAAATTGAAGAGCACATCAGTGAGCGACAGGCAGAAGTGTTGGCTGAATTTGAGAGAAGGAAGCGAGCTCGACAAATCAACGTTTCCACAGATGACTCAGAGGTCAAGGCTTGCCTCAGAGCCTTGGGGGAACCCATCACACTTTTTGGAGAGGGCCCTGCAGAAAGAAGAGAAAGGTTAAGAAATATTCTCTCAGTGGTCGGTACTGATGCCTTAAAAAAGACAAAAAAAGATGATGAAAAGTCTAAGAAGTCCAAAGAAGAGTATCAGCAAACCTGGTACCATGAAGGACCAAACAGCCTGAAGGTGGCTAGACTGTGGATCGCTAATTATTCACTGCCTAGGGCAATGAAACGCTTGGAAGAAGCCCGTCTCCATAAAGAGATTCCTGAGACAACTAGAACATCCCAGATGCAAGAGCTGCACAAATCCCTCCGGTCTTTGAATAATTTCTGCAGCCAAATTGGGGATGATCGGCCTATTTCCTACTGTCACTTTAGTCCCAATTCCAAAATGCTGGCCACAGCTTGTTGGAGTGGGCTTTGCAAGCTCTGGTCTGTTCCTGATTGTAACCTCCTTCACACCCTTCGAGGCCATAATACAAATGTAGGAGCAGTTGTATTTCATCCCAAGTCCACTGTCTCATTGGACCAAAAAGATGTCAACCTGGCTTCTTGTGCTGCTGATGGTTCTGTGAAGCTTTGGAGTCTTGACAGTGATGAACCAGTGGCAGATATTGAAGGCCATACAGTGCGAGTGGCCCGAGTAATGTGGCATCCATCGGGACGTTTCCTGGGCACCACCTGCTATGATCGTTCGTGGCGCTTATGGGATTTGGAGGCTCAAGAGGAGATCCTGCACCAGGAAGGCCATAGCATGGGTGTATATGACATTGCCTTCCATCAAGATGGCTCTTTGGCTGGCACTGGGGGACTGGATGCTTTTGGTCGAGTTTGGGACCTGCGCACAGGACGTTGCATCATGTTCCTAGAAGGCCACCTCAAGGAAATCTATGGAATAAGTTTCTCCCCCAATGGCTACCACATTGCAACTGGAAGTGGTGACAACACCTGCAAAGTCTGGGACCTTCGACAGCGGCGCTGCATCTATACCATCCCTGCCCATCAGAACTTAGTGACTGGGGTCAAGTTTGAGCCTATCCATGGGAACTTCTTGCTCACAGGCGCCTATGATAACACAGCCAAGATCTGGACCCACCCAGGCTGGTCCCCACTGAAGACTCTGGCAGGCCATGAAGGCAAAGTGATGGGCCTGGACATTTCTTCTGATGGGCAGCTCATAGCCACTTGCTCATATGATAGGACCTTCAAGCTCTGGGTGGCTGAGTAG

Related Sequences

XP_004849597.1 Protein

Prpf4 PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp4 [Heterocephalus glaber]

Length: 521 aa      View alignments
>XP_004849597.1
MASSRASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAVVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYHIATGSGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWVAE