Sequence details NCBI ID: XM_004849506.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col27a1
Gene Name collagen, type XXVII, alpha 1
Entrez Gene ID 101725027

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL27A1 ENSCPOG00000008089 (Guinea pig)

Gene Details

collagen, type XXVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007274, Guinea pig)

Protein Percentage 88.71%
CDS Percentage 90.36%
Ka/Ks Ratio 0.36514 (Ka = 0.0688, Ks = 0.1884)

COL27A1 ENSG00000196739 (Human)

Gene Details

collagen, type XXVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000348385, Human)

Protein Percentage 84.77%
CDS Percentage 86.52%
Ka/Ks Ratio 0.30714 (Ka = 0.094, Ks = 0.3061)

Col27a1 ENSMUSG00000045672 (Mouse)

Gene Details

collagen, type XXVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000043816, Mouse)

Protein Percentage 80.29%
CDS Percentage 81.58%
Ka/Ks Ratio 0.2907 (Ka = 0.1342, Ks = 0.4616)

Col27a1 ENSRNOG00000007657 (Rat)

Gene Details

collagen, type XXVII, alpha 1 (Col27a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010333, Rat)

Protein Percentage 78.51%
CDS Percentage 80.74%
Ka/Ks Ratio 0.309 (Ka = 0.1467, Ks = 0.4748)

Genome Location

Sequence Coding sequence

Length: 5568 bp    Location: 20978290..20861516   Strand: -
Raw sequence   
>XM_004849506.1
ATGGGAGCGGGATCGGCGCGGGGCGCTCGAGGCACGGCGGCGGAGGCGGCGGCACGCGCGGGGGGGTTTCTCTTCGCCTGGATCTTAGTCTCGTTCGCCTGTCACCTGGCCTCCACCCAAGGAGCTCCTGAAGATGTGGACGTCCTCCAGCAGCTGGGCCTCAGCTGGACGAAGGCAGGGGTTGGTCAGAGCCCCGCACCCCCAGGAATCATTCCTTTCCCGCTGGGCTTCATTTTCACGCAGCGGGCCCGGCTGCAGGCCCCCACAGCCACCGTCATTCCTGCCACCCTCGGCACAGAGCTGGCACTGGTGCTGAGCCTCTGCTCCCACCGGGTCAACCATGCCTTCCTCTTTGCTATCCGCAGCCAGAAGCACAGGCTGCAGCTGGGCCTGCAGTTCCTCCCTGGCAGGACCATCGTCCACCTGGGGCCCCGGCGCTCTGTGGCCTTCGACCTTGATGTTCACGATGGGCGCTGGCACCACCTGGCACTTGAGCTCCACAACCGTTCGGTCACCCTCGTGACGGCCTGTGGGCAGCGCCGGGTGCCTGTCCCGCTGCCTTTCCACAGGGACTCCACGCTCGACCCCCAGGGCTCCTTCCTCTTTGGGAAGATGAGCCCACACGCTGTCCAGTTTGAAGGTGCCCTCTGTCAGTTCAGTGTCCTCCCTGTGACACGGGTTGCTCATAACTACTGTGCCCACCTGAGGAAGCAGTGTGGACGGGCTGACATGTATCGGCCCCAGCTGGGACCCCTCTTCCCCCTAGAGGCTGGCAGATCCTTCATCCTCCAGACCGACCTGGCCCTGCTAGGCCTGGAGAACTTGACCACTGCCACTCCAGCCCTGGGGGCAAGGCCAGCAGGCAGGGGACCCATGGTAACTGTGCCCACCAAGCCCCTAAGGACAAACCCTCCAGAGCCTCACCAGCATGCAGCAGGGAGAGGCCCAGCCTGGACCCCATTGCCACCTGCCAAGCTGTCAGCCAATAAAGTACCTCATTCCTCATCCCCAGCCCCTCCTACCAGCTCTACCAGGACCCGCCTTACGGCTGCCCAACCATTGCAGAAGATGACAGCCACCAAGATCCCCAAGAGTCTCCCCACCAAGCCTTCGACCCCATCTCCTTCAGTCGCCCCTGGAAGAAGCCCCCATCTGACCCAGAAAACAGCTGCCTATTCAGTCACAAAGCCAGTCCCACCCACCCAGAAGCCTGTGCCACCCACTCCCTACCCAGCTCCTGCCAAGGCCTCTGGTCCCACGGTGAAGCCTGTCCAGAGGAACCCCGTCATGCCCCGACCTCTGCCACTCAGTGCCCGGCCTCCTGTGGCCAGCTCCTCTAAGTCCTTGCCCACAGTAGCCCAGACTGAGGCCAGGCTAACCAGCCATGCCAGCAGGCTGGCCTCTACCCGCACCAGTGCCCAAAGACCTCCCCAGCCTGCGGTTTTGCCTCTGTCTTCTGCTTCCAGTTCTGGCTCTACCAGAGCCACTCGGCCATCAGCCACAGTGGTGGCTCCAGCCTTGGGCACTGGGACTCCCAGAACAGCACCTCCCACGCTCTCTCCTGGCTCTGTCCTTACTGGAAACAAGAAACCCACTGGATCAGAAGCCTCAAAGAAGGATGGACCCAAGAGTAGCTCCTGGAAGCCTGAACCCGTCAAACCTGGGAAGGCAGTCGGGGATGCCCCCTTGAATGACTGGACAATAAGGCCCAGCCCCAGACAGCCCCCATCCAGTCGGCAGACCACCCCAGCCCTGGCCTTAGCCCCGGCGAGAGTCCTGTCCTCCAGCCCCCAGCCCACGAGCAGCAGCTACTCCTTCTTCCACCTGGTGGGACCCACACCTTTCCCCCTGCTGATGGGGCCTCCAGGGCTCAAGGGAGACTGCGGCCTGCCGGGTCCTCCTGGGCTTCCTGGGCCACCTGGACCTCCTGGCCCACGAGGGCCTCGGGGTCTTCCTGGGCCATATGGAAACCCAGGCCTGCCCGGCCCTCCTGGTGCCAAAGGACAGAAAGGGGACCTGGGGCTCTCACCAGGACAGGCCCATGATGGAGCCAAGGGTGACACGGGCCTGCCTGGGCTCTCTGGGAATCCAGGACCTCCGGGACGAAAGGGCTACAAGGGCTATCCTGGACCGGCAGGGCACCCCGGAGAACAGGGGCAGCCGGGACCCGAGGGCAGCCCAGGGGCCAAAGGTTACCCTGGCAGGCAGGGGTTACCTGGACCCATAGGAGACCCTGGCCCTAAAGGCAGCCGGGGCTACATTGGAATCCCAGGGCTCTTCGGCCTGCCAGGGTCTGACGGAGAGCGGGGCCTGCCTGGCGTTCCTGGCAAGAGGGGCAAGATGGGTAGGCCGGGGTTCCCTGGAGACTTTGGGGAAAGAGGCCTACCGGGACTTGATGGAAATCCTGGCGATCTGGGCCTGCCAGGGCCCCCAGGAGTCCCTGGCCTCATTGGTGACATGGGAGCATTGGGTCCCATTGGCTACCCAGGACCCAAAGGCATGAAGGGACTGATGGGCAGCGTGGGGGAGCCCGGACTGAAAGGTGATAAGGGCGAGCAGGGGGTCCCAGGCGTGTCGGGAGATCCCGGCTTCCAAGGAGACAAGGGGAGCCAGGGGTTGCCAGGTGTCCCAGGTGCACGGGGGAAGCCAGGGCCCACTGGCAGAGTTGGAAACAAAGGCTCTCTTGGGTTTCCTGGGGCCCCTGGACCCGAGGGATTTCCAGGAGACATTGGCCCCCCTGGAGACAATGGCCCAGAAGGCTCGAAGGGTAAGCCTGGAGCTCGAGGCCTGCCGGGACCCTGTGGGCAGCTAGGGCCTGAGGGGGATGAGGGACCCATGGGGCCACCAGGGGCCCCTGGCGTGGAGGGCCTGCCTGGAAGGAAGGGATTTCCTGGGAGGCCCGGCCCAGATGGCTCAAAGGGGGAGCCAGGGGATCCTGGACGGCCAGGGCCCATGGGTGAACAGGGGCTTCTGGGATTCATCGGTCTAGTTGGGGAGCCAGGAATTGTGGGAGAAAAGGGTGACCGTGGCATAATGGGACCACCAGGTGCTCCGGGACCCAAGGGGTCGATGGGTCACCCAGGAATTCCAGGTGGTGTCGGGATCCCCGGAGAGCCAGGACCCCCGGGCCCTCGAGGATCACGAGGCCCACCAGGCATTCGGGGAGCGAAGGGACACCGGGGTCCCCGAGGACCAGACGGATCAGCTGGAGAGCAGGGGTCCAGGGGCCAGAAGGGCCCTGCAGGACCTCAGGGCAGACCGGGCCCACCTGGACAGCAGGGTGCAGCTGGTGAGCAAGGCCACTCAGGGCCTCTAGGCTTTCTTGGCATTCCGGGTCCCTCAGGCCCCCCAGGTGCCAAGGGCCTCCCAGGAGAACCGGGCCCTCAGGGACTGCAGGGGCCAGCTGGCCCTCCAGGAGAGATGGGGCCCAAGGGGCCGCCGGGTGCCGTGGGAGAACTGGGCCTTCCTGGGGAAGCTGGGATGAAGGGCGACTTTGGACCCCTGGGCACCCCTGGGGAGCAGGGCCTCACTGGGCAGCGGGGGGAGCCAGGCCTCGAGGGAGACAGTGGCCCTGCAGGGCCCGATGGCCTGAAGGGGGACAGGGGGGACCCAGGGCCTGACGGTGAACGTGGTGAGAAAGGCCAGGAAGGGCTGAAGGGCGAGGACGGGCACCCTGGGCCTCCTGGCATCACTGGCATCCGGGGTCCCGAAGGAAAACCAGGGAAGCAAGGCGAGAAGGGCCGGATGGGAGCCAAGGGTGCCAAGGGCCACCCCGGACAGCTGGGTGAGATGGGCGTCCCTGGAGACTCTGGAGCCCCTGGCACCCCAGGCCCCAAAGGCTCCCGGGGCAGCCTGGGACCAACGGGTGCTCCAGGACGGATGGGGGTCCAAGGAGAACCGGGACTGGCTGGTTACAACGGACACAAAGGCATTGTGGGACCCCTCGGGCCTCCCGGACCAAAAGGCGAGAAGGGAGAACAGGGTGAGGACGGCAAGGCCGAGGGCCCCCCTGGGCCTCCGGGAGATCGGGGCCCCATGGGCCATCGAGGAGACCGAGGGGAGCCTGGGGACCCTGGATACCCTGGACAGGAGGGTGTGCATGGACTCCGTGGAAAGCCTGGCCAGCAGGGCCAACCCGGGCATCTGGGACCCCGGGGGCGGCCAGGACCCAAAGGATCAAAAGGCGAAGAGGGCCCAAAGGGAAGGCCAGGCAAGGCTGGGGCACCAGGCCGGAGGGGCATCCAGGGGCTGCAGGGGCTGCCGGGGCCTCGGGGCCTGGTGGGGAGGCAAGGCCCTGAGGGTGCCGCTGGACCGGACGGGCTTCCTGGCGGGGATGGTCGAGCAGGACAGCAGGGAGAGCAGGGAGATGATGGGGACCCTGGCCCCTTGGGGCCTGCCGGGAGGAGAGGAAATCCAGGTGTGGCTGGCTTGCCTGGAACACAGGGGCCCCCGGGATTCAAGGGTGAAAGTGGATTTCCTGGGCAGCTGGGTCCTCCTGGCAAGCGGGGGACAGAGGGTGGAACGGGACTTCCTGGGACCCAGGGGGAGCTGGGCTCCAAAGGCCAGCCGGGCGACTCTGGCGAAACAGGCTTTCCCGGCGTGGCCGGCCTCTTCGGACCCAAGGGTCCCCCTGGTGACATCGGCTTCAAAGGCATCCAGGGCCCCCGGGGGCCTCCTGGCTTGATGGGGAAGGAAGGCATCATTGGGCCCCTCGGAAGCCTGGGACCCTCGGGACTCCCGGGTCGGAAGGGTGACAAAGGCAGCCGAGGGGGCTGGGGACTGCAAGGTCCAAAGGGTCCTCCTGGCCGGAGAGGGCAGCCCGGGCCACCGGGTCCCCCAGGACACCCCATCCAGCTTCAACAAGATGACCTCGGGGCAGCTTTCCAGACATGGATGGACACTAACGGAGCACTCAGATCAGAGGGGTACAGCTATCCGGACCGGCTGGTGCTGGACCAGGGAGGGGAGATCTTCAAAACCTTACACTACCTCAGCAATCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCCGGGACCTCATGGACTGTGAGCAGAAGATGGCAGACGGTACCTACTGGGTGGATCCTAACCTTGGCTGTGCGTCGGACACCATTGAAGTCTCCTGCAACTTCACACATGGCGGACAGACCTGCCTGAAGCCCATCATGGCCTCCAAGGTGGAGTTTGCTGTCAGCCGGGTACAGATGAACTTTTTGCACCTGCTCAGCTCTGAGGTGACGCAGCACATCACCATCCACTGCCTGAACGTGACCGTGTGGCAGGAGGGCCCGGGGCACACCCCGGCCAAGCAGGCTGTGCGCTTCCGGGCCTGGAATGGGCAGATCTTCAAAGCTGGGGGTCAGCTGAGGCCAGAGGTATCTGTGGATGGCTGCAAGGTCCATGATGGCCACTGGCATCAGACGCTCTTCACCTTCCGCACCCAGGACCCCCAGCAGCTGCCCATCGTCGGTGTGGACAACCTCCCTCCTGCCTCACCAGGGAAGCAGTACCGCCTTGAAGTTGGACCCGCGTGCTTCCTCTGA

Related Sequences

XP_004849563.1 Protein

Col27a1 PREDICTED: collagen alpha-1(XXVII) chain [Heterocephalus glaber]

Length: 1855 aa      View alignments
>XP_004849563.1
MGAGSARGARGTAAEAAARAGGFLFAWILVSFACHLASTQGAPEDVDVLQQLGLSWTKAGVGQSPAPPGIIPFPLGFIFTQRARLQAPTATVIPATLGTELALVLSLCSHRVNHAFLFAIRSQKHRLQLGLQFLPGRTIVHLGPRRSVAFDLDVHDGRWHHLALELHNRSVTLVTACGQRRVPVPLPFHRDSTLDPQGSFLFGKMSPHAVQFEGALCQFSVLPVTRVAHNYCAHLRKQCGRADMYRPQLGPLFPLEAGRSFILQTDLALLGLENLTTATPALGARPAGRGPMVTVPTKPLRTNPPEPHQHAAGRGPAWTPLPPAKLSANKVPHSSSPAPPTSSTRTRLTAAQPLQKMTATKIPKSLPTKPSTPSPSVAPGRSPHLTQKTAAYSVTKPVPPTQKPVPPTPYPAPAKASGPTVKPVQRNPVMPRPLPLSARPPVASSSKSLPTVAQTEARLTSHASRLASTRTSAQRPPQPAVLPLSSASSSGSTRATRPSATVVAPALGTGTPRTAPPTLSPGSVLTGNKKPTGSEASKKDGPKSSSWKPEPVKPGKAVGDAPLNDWTIRPSPRQPPSSRQTTPALALAPARVLSSSPQPTSSSYSFFHLVGPTPFPLLMGPPGLKGDCGLPGPPGLPGPPGPPGPRGPRGLPGPYGNPGLPGPPGAKGQKGDLGLSPGQAHDGAKGDTGLPGLSGNPGPPGRKGYKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPIGDPGPKGSRGYIGIPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGLPGLDGNPGDLGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGVPGARGKPGPTGRVGNKGSLGFPGAPGPEGFPGDIGPPGDNGPEGSKGKPGARGLPGPCGQLGPEGDEGPMGPPGAPGVEGLPGRKGFPGRPGPDGSKGEPGDPGRPGPMGEQGLLGFIGLVGEPGIVGEKGDRGIMGPPGAPGPKGSMGHPGIPGGVGIPGEPGPPGPRGSRGPPGIRGAKGHRGPRGPDGSAGEQGSRGQKGPAGPQGRPGPPGQQGAAGEQGHSGPLGFLGIPGPSGPPGAKGLPGEPGPQGLQGPAGPPGEMGPKGPPGAVGELGLPGEAGMKGDFGPLGTPGEQGLTGQRGEPGLEGDSGPAGPDGLKGDRGDPGPDGERGEKGQEGLKGEDGHPGPPGITGIRGPEGKPGKQGEKGRMGAKGAKGHPGQLGEMGVPGDSGAPGTPGPKGSRGSLGPTGAPGRMGVQGEPGLAGYNGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPMGHRGDRGEPGDPGYPGQEGVHGLRGKPGQQGQPGHLGPRGRPGPKGSKGEEGPKGRPGKAGAPGRRGIQGLQGLPGPRGLVGRQGPEGAAGPDGLPGGDGRAGQQGEQGDDGDPGPLGPAGRRGNPGVAGLPGTQGPPGFKGESGFPGQLGPPGKRGTEGGTGLPGTQGELGSKGQPGDSGETGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPLGSLGPSGLPGRKGDKGSRGGWGLQGPKGPPGRRGQPGPPGPPGHPIQLQQDDLGAAFQTWMDTNGALRSEGYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMADGTYWVDPNLGCASDTIEVSCNFTHGGQTCLKPIMASKVEFAVSRVQMNFLHLLSSEVTQHITIHCLNVTVWQEGPGHTPAKQAVRFRAWNGQIFKAGGQLRPEVSVDGCKVHDGHWHQTLFTFRTQDPQQLPIVGVDNLPPASPGKQYRLEVGPACFL