Sequence details NCBI ID: XM_004849478.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101715916

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TLR4 ENSCPOG00000015159 (Guinea pig)

Gene Details

toll-like receptor 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013667, Guinea pig)

Protein Percentage 80.27%
CDS Percentage 85.67%
Ka/Ks Ratio 0.4645 (Ka = 0.1276, Ks = 0.2747)

TLR4 ENSG00000136869 (Human)

Gene Details

toll-like receptor 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000363089, Human)

Protein Percentage 71.89%
CDS Percentage 79.55%
Ka/Ks Ratio 0.50123 (Ka = 0.2004, Ks = 0.3998)

Tlr4 ENSMUSG00000039005 (Mouse)

Gene Details

toll-like receptor 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000045770, Mouse)

Protein Percentage 63.03%
CDS Percentage 72.75%
Ka/Ks Ratio 0.42575 (Ka = 0.2781, Ks = 0.6532)

Tlr4 ENSRNOG00000010522 (Rat)

Gene Details

toll-like receptor 4 (Tlr4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014020, Rat)

Protein Percentage 63.87%
CDS Percentage 73.07%
Ka/Ks Ratio 0.39495 (Ka = 0.2654, Ks = 0.6721)

Genome Location

Sequence Coding sequence

Length: 2514 bp    Location: 17608941..17597897   Strand: -
Raw sequence   
>XM_004849478.1
ATGACTCCTTCTCAGGTCCTGGCTGGGACTCTGCTTCCAGCCATGGCCTTCCTCGCCTGCGTGAGACCTGAAAGCTGGGAGCCCTGCGTGGAGGTGGTTCCCAACATTACATATGACTGCATGGAGCAAAATCTCTACAAAATCCCCAGCAGCATCCCCTCCTCAGCCAAGCACCTGGACCTGAGCTTTAATCCCCTGATGTTCTTAGGAAGCCAAAGCTTCACCAGTTTTCCAGAACTAGAGGTGCTGGATTTATCCAGATGTGAAATTCAAAAGATTGAAGATGATGCATACTGGGGCTTACACTACCTCTCTACCTTGATATTGACAGGAAACCCTATCAAGAATTTAGCACCAGGAGCCTTTTCTGGACTACTCAGTTTACAGAAGTTGGTGGCCGTGGAGATAAATCTGTCCTCTCTAGAGAACTTCCCAATTGGACATCTCAAAACCTTGAAGGAGCTTAATGTTGCTCACAATCTTGTCCGTTCCTTCAAGTTACCTGAATATTTTTCTCACCTGAACAACTTGGAGTACTTGGACCTTTCCAATAACAAGATTCAAAATATTTATCATAAAGACCTGCATGTTCTATATAACAACTCCAAACTCTCTTTAGACTTGTCTCTAAACCCAATTGATTTTATCCAACCTGGTGCCTTTGACAAAATGAGGCTTCAAGGACTGACTTTGAGAAGTAATTTTGATAATACAAGTGTAATGAAAACTTGTATTCAAGGTCTGGCCGGTTTAGAAGTCAATCAGTTGGTTCTGGGAGAATTTAAAAATGAAAGGTATGTGGAAGAGTTTGACAAATCTGCCCTGCAAGGACTGTGTACCTTGACCATTGAAGAATTCAGGTTGTCATATTTAGATGACTTTCCAAAAAATATTAATGGCCTCTTTAATTGTTTGGTAAATGTTTCTGCAGTGTCTCTGGCACATGTGTATTCAAGGAGACTAGAAGGCCTGCCTAAAGATTTAAAATGGCAATCTTTAGAGTTGGTGAAGTGTAAAGTTAATCAATTTCCTGCATTTTCAATCCCCTCTCTCAAAAGGTATAGTTTCACAGCCAACAGAGGTGTGAACAGTTTTACAGACCTTACACTGAAAAACCTTGAATTTCTAGATCTCAGTGGAAATGGCATGAGTTTCAAGGGTTGTTGTTCTGTGAAAGATTTGGAAACACCTAATCTGAAGTATTTAAATCTAAGCTTCAATGATGTTATAAGCATGAGCTCAAACTTCATGGGTTTGGAACTACTGGAGCGTCTGGAGTTTCAGCATTCTACTTTGAAACAGACCAGTCAATTTTCAATGTTCTTATCACTCAGCAGACTCCTTTATCTTGACATTTCCTATACTCACACCCATGTTGCCTTCCATGGCATCTTCAGTGGCTTGTTCAGTCTCCAAGTCTTAAAAATGCCTGGCAATTCTTTCAAGGACAACACCCTTTCCAATATCTTCATGGAGGTCACTAACTTGACCCTTTTGGACATTTCAGAGTGTCAACTGGAACATGTGTCCCAGGGAGTATTTGACAAACTTCTCAGGCTTCGGGTCCTAAATATGAGTAATAACCACTTCTTATTACTGGATGCACTTTCTTTTAAACCTCTCCATACCCTCCAGAATCTGGATTGCAGTTCCAATAGAATAGCATCTTCCAATGGGCAAGATCTGCAGCATTTCCCAAGCAATCTAACTACCTTAAACCTTACTCAGAATCCTTTTGATTGTTCTTGTGAGCACCAGAGTTTCCTGCAATGGATTAAGGACCAAAGGCACCTCTTGGTGGAAGCTGAACGATTGGAGTGTGCCATGCCTCCAGATATGCAGGGTAAGATGCTGCTGAGTTTTAGGAATGCCACCTGTCAAATACCCAAGGTTATCATCATTGTGACAGTGGTCAGTGTCCTTGTGGTGTCTGTTATAGCATGTTTGGTCTACAAATTCTATTTTCACCTCATGCTTCTTGCTGGCTGCAAAAAGTATGGTCAAGGCGAAAACACCTATGATGCCTTTGTCATCTACTCAAGCCAAGATGAGGACTGGGTGAGGAATGAGTTGGTAAAGAACTTGGAAGAAGGTGTGCCACCCTTTAAGCTCTGCCTGCACTACAGAGACTTTATTCCTGGTGTGGCCATCGCTGCCAACATCATCCAGGAAGGTTTCCACAAAAGCAGGAAGGTAATTGTGGTGGTGTCTCAGCACTTTATTGAGAGCCGCTGGTGTATCTTTGAATATGAGATTGCTCAGACCTGGCAGTTTCTCAGCAGCCGAGCTGGCATCATTTTCATTGTCCTGCAAAAGTTGGAGAAGTCCCTGCTCCGGCAGCAGGTGGAGCTGTATCGCCTTCTCAGCAGGAACACTTACCTGGAGTGGGAAGACCATGGCCTCGGGCGGCACATCTTCTGGAGACGACTCAGGAAAGCCCTGATGGATGGAAAATCATGGAATCCAGAAGAACAGCAGATGCAGAAAACAGCCAGAAAGAAGCAGCCACTTTGA

Related Sequences

XP_004849535.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: toll-like receptor 4 [Heterocephalus glaber]

Length: 837 aa      View alignments
>XP_004849535.1
MTPSQVLAGTLLPAMAFLACVRPESWEPCVEVVPNITYDCMEQNLYKIPSSIPSSAKHLDLSFNPLMFLGSQSFTSFPELEVLDLSRCEIQKIEDDAYWGLHYLSTLILTGNPIKNLAPGAFSGLLSLQKLVAVEINLSSLENFPIGHLKTLKELNVAHNLVRSFKLPEYFSHLNNLEYLDLSNNKIQNIYHKDLHVLYNNSKLSLDLSLNPIDFIQPGAFDKMRLQGLTLRSNFDNTSVMKTCIQGLAGLEVNQLVLGEFKNERYVEEFDKSALQGLCTLTIEEFRLSYLDDFPKNINGLFNCLVNVSAVSLAHVYSRRLEGLPKDLKWQSLELVKCKVNQFPAFSIPSLKRYSFTANRGVNSFTDLTLKNLEFLDLSGNGMSFKGCCSVKDLETPNLKYLNLSFNDVISMSSNFMGLELLERLEFQHSTLKQTSQFSMFLSLSRLLYLDISYTHTHVAFHGIFSGLFSLQVLKMPGNSFKDNTLSNIFMEVTNLTLLDISECQLEHVSQGVFDKLLRLRVLNMSNNHFLLLDALSFKPLHTLQNLDCSSNRIASSNGQDLQHFPSNLTTLNLTQNPFDCSCEHQSFLQWIKDQRHLLVEAERLECAMPPDMQGKMLLSFRNATCQIPKVIIIVTVVSVLVVSVIACLVYKFYFHLMLLAGCKKYGQGENTYDAFVIYSSQDEDWVRNELVKNLEEGVPPFKLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIESRWCIFEYEIAQTWQFLSSRAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDHGLGRHIFWRRLRKALMDGKSWNPEEQQMQKTARKKQPL