Details from NCBI annotation

Gene Symbol Traf1
Gene Name TNF receptor-associated factor 1, transcript variant X1
Entrez Gene ID 101710804

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRAF1 ENSCPOG00000002248 (Guinea pig)

Gene Details

TNF receptor-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002039, Guinea pig)

Protein Percentage 92.77%
CDS Percentage 92.61%
Ka/Ks Ratio 0.13249 (Ka = 0.0357, Ks = 0.2695)

TRAF1 ENSG00000056558 (Human)

Gene Details

TNF receptor-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000362994, Human)

Protein Percentage 90.12%
CDS Percentage 89.16%
Ka/Ks Ratio 0.10266 (Ka = 0.0503, Ks = 0.4895)

Traf1 ENSMUSG00000026875 (Mouse)

Gene Details

TNF receptor-associated factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000130759, Mouse)

Protein Percentage 84.11%
CDS Percentage 84.84%
Ka/Ks Ratio 0.13043 (Ka = 0.0818, Ks = 0.6271)

Traf1 ENSRNOG00000048914 (Rat)

Gene Details

TNF receptor-associated factor 1 (Traf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064786, Rat)

Protein Percentage 83.86%
CDS Percentage 84.6%
Ka/Ks Ratio 0.12566 (Ka = 0.0827, Ks = 0.6585)

Genome Location

Sequence Coding sequence

Length: 1251 bp    Location: 14424187..14444113   Strand: +
>XM_004849464.1
ATGGCCTCCAGCTCAGCCAGCAGCCCCCGTCCGGCCCCCGATGAGAACGAGTTCCCCTTTGGGTGTCCCTCCACCACCTGCCAGGACCTGCCAGGACCCAGGGCCCTCTGCTGCACAGCCTGCCGCCCCGAGAACCTAAGGAACAGCAAGGATCAGATCTGTCCCAAAAGCAGAGGGGACACCCTCCAATCTGAAAGCCCAGGAAGCCTTCTGACCCAGGAGAAGGTTCACCCCGAGGTGGCTGATGCTGGAGTTGGGTGCCCCTTTGCAGGTGTTGGCTGCTCCTTCAAGCAGGGCAGCCCCCAGTCCCTACAGGAGCATGAGGCCACCTCCCAGGCCACCCACCTGAACCTGCTGCTGGGGTTCATGAAACAGTGGAAGGCCCAGCTGGGCTCAGGCACAGGTTCCGGGCCCACAGCCCTGGAGCGGAACCTGTCAGACCTGCAGCTGCAGGCAGCCGTGGAGGTGCCAGGGGACCTGGAGGTGGATTGCTACCGAGCTCCCTGCTCCGAGAGCCAGGAGGAGCTGGCCCTGCAGCACTTCATGAAGGAGAAGCTGCTGGCCGAGCTGGAGGAGAAGCTTCGTGTGTTTGAGAACATCGTCGCTGTCCTCAACAAGGAGGTGGAAGCCTCCCACCTGGCCTTGGCCGCCTCCATCCACCAGAGCCAACTGGACCAAGAGCGCATCCTGAGCTTGGAGCAGAGGGTGATGGAGTTGCAGCAGACCCTGGCCCAGAAAGACCAGGCACTGGGAAAGCTGGAGCAGGGTCTGCGCCTCATGGAGGAGGCCTCCTTCGATGGCACCTTCGTGTGGAAGATCACCAATGTCACCAGGAGGTGCCATGAGTCTGCTTGTGGCCGGACTGTCAGTCTCTTCTCCCCAGCTTTCTACACTGCCAAGTATGGCTACAAGTTGTGCCTGAGGCTCTACCTGAATGGGGATGGCACAGGCAAGAGGACCCACCTGTCGCTTTTCATCGTGATCATGAGAGGAGAGTATGATGCTCTGCTGCCATGGCCTTTCCGGAACAAGGTCACCTTCATGCTGCTAGACCAGAACAACCGTGAGCACGCCATTGATGCCTTCCGGCCTGACCTGAGCTCAGCATCCTTCCAGCGGCCCCAGAGTGAAACCAACGTGGCCAGCGGCTGCCCGCTCTTCTTCCCCCTCAACAAGCTGCAGTCGCCCAAGCACGCCTATGTGAAGGATGACACCATGTTCCTCAAGTGCATCGTGGAGACCGGCTCTTAG

Related Sequences

XP_004849521.1 Protein

Traf1 PREDICTED: TNF receptor-associated factor 1 isoform X1 [Heterocephalus glaber]

Length: 416 aa      View alignments
>XP_004849521.1
MASSSASSPRPAPDENEFPFGCPSTTCQDLPGPRALCCTACRPENLRNSKDQICPKSRGDTLQSESPGSLLTQEKVHPEVADAGVGCPFAGVGCSFKQGSPQSLQEHEATSQATHLNLLLGFMKQWKAQLGSGTGSGPTALERNLSDLQLQAAVEVPGDLEVDCYRAPCSESQEELALQHFMKEKLLAELEEKLRVFENIVAVLNKEVEASHLALAASIHQSQLDQERILSLEQRVMELQQTLAQKDQALGKLEQGLRLMEEASFDGTFVWKITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLNKLQSPKHAYVKDDTMFLKCIVETGS