Sequence details NCBI ID: XM_004849000.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col5a1
Gene Name collagen, type V, alpha 1
Entrez Gene ID 101724307

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL5A1 ENSCPOG00000023391 (Guinea pig)

Gene Details

collagen, type V, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017669, Guinea pig)

Protein Percentage 96.42%
CDS Percentage 91.14%
Ka/Ks Ratio 0.06211 (Ka = 0.0189, Ks = 0.3048)

COL5A1 ENSG00000130635 (Human)

Gene Details

collagen, type V, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000360882, Human)

Protein Percentage 95.21%
CDS Percentage 88.05%
Ka/Ks Ratio 0.05959 (Ka = 0.0277, Ks = 0.4651)

Col5a1 ENSMUSG00000026837 (Mouse)

Gene Details

collagen, type V, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028280, Mouse)

Protein Percentage 94.06%
CDS Percentage 86.15%
Ka/Ks Ratio 0.06367 (Ka = 0.0355, Ks = 0.557)

Col5a1 ENSRNOG00000008749 (Rat)

Gene Details

collagen alpha-1(V) chain precursor

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012334, Rat)

Protein Percentage 92.96%
CDS Percentage 84.94%
Ka/Ks Ratio 0.08023 (Ka = 0.0466, Ks = 0.5809)

Genome Location

Sequence Coding sequence

Length: 5544 bp    Location: 2593961..2713768   Strand: +
Raw sequence   
>XM_004849000.1
ATGGACGTCCACACCCGCTGGAAAGCGCGCGGCCCCCCGCGCCCGGGCGCCCCGCCGCTGTCCCCGCTGCTGCTCCCTTTCCTCCTGCTGCTGTGGGCGCCGCCGCCGAGCCGCGCAGCTCAGCCAGCAGATCTCCTGAAGGTTCTGGACTTCCACACCTTGCCAGATGGAATAACAAAGACTACAGGGTTTTGTGCCACACGACGATCCTCCAAGGGCCCAGATGTCGCCTACCGAGTCACCAAAGATGCTCAGCTCAGCGCGCCCACCAAGCAGCTGTACCCTGCGTCTGTGTTTCCTGAGGACTTCTCCATCCTGACCACTGTGAAAGCCAAGAAAGGCAGCCAGGCCTTCTTGGTCTCCATCTACAATGAGCAGGGCATCCAGCAGATCGGCCTGGAGCTGGGCCGCTCGCCCGTCTTCCTCTATGAGGACCACACCGGGAAGCCTGGGCCCGAGCAGTACCCTCTCTTCAGGGGCATCAACCTGTCAGATGGCAAGTGGCACAGAATTGCTCTCAGTGTCCACAAGAAGAACGTCACCTTGATCCTCGACTGTAAAAAAAAGACCACGAAGTTCCTTGACCGCAGCGACCACCCCATTGTAGATGTCAATGGCATCATTGTGTTTGGCACCCGGATCCTGGACGAGGAAGTATTTGAGGGTGACATCCAGCAGTTGCTCTTCGTCTCAGACCACCGGGCAGCTTATGATTACTGTGAGCACTACAGTCCCGACTGTGACACCGCGGCCCCCGACACTCCGCAGTCGCAGGACCCCAACCTAGATGAATACTACCCAGATGGAGAGGGCGATGGTGAGACCTATTACTACGAGTACCCCTACTATGAGGACTCGGACGACATGGGGAAGGAGCCTGCCCCGACCAAAACGCCGGTGGAAGCTGCGAGAGAAACCACGGAGATTCCTGAGGAGCTGACCCCGCCCCCCACGGCAGCCCCTACGGTGCCTGATTTGGTGCCCGAGACCAGTGAGCAGGCTGGCGGGGAGGAGGACCCAGGCATCGGGGACTACGAGTACGTGCCCATCGACGACTACTACACACCCTCCCCGTACGAGGACCTCAGTTACGGCGAGGGCCTTGAGAACCCTGAGCAGCCCACTGACCCCAACTCGGGGCCCGAAGTCCCCACCAGCACCACGGTGGCCTCCAACGTTTCCAACCCAGCTCTGTCTCCAGGGGAAGGGAAGGATGACCTGGAGGGCGGGTTCGCAGAGGAAACCCTCAAGAACCTGGATGAGAACTACTACGACCCTTACTTTGATCCTGACTCCAATGGCTCCCCATCGGAGATTGGGCCAGGCATGCCTGCGAACCAGGACACCATCTACGAAGGGATCGGAGGACCCCGGGGTGAGAAAGGTCAGAAGGGAGAGCCGGCCATCATTGAGCCAGGGATGCTCATCGAGGGGCCACCTGGCCCGGAAGGACCTGCTGGTCTTCCAGGACCTCCAGGAACTACGGGTCCCACTGGCCAAGTGGGCGACCCTGGAGAGAGGGGTCCCCCTGGTCGGCCCGGCCTTCCTGGGGCCGATGGCCTGCCCGGCCCCCCGGGAACCATGCTGATGCTGCCGTTCCGCTTTGGAGGTGGTGGGGATGCGGGCGCCAAAGGCCCCATGGTCTCCGCCCAGGAGTCGCAGGCCCAGGCCATCCTGCAGCAGGCCAGGCTGGCGTTGCGGGGACCAGTGGGCCCGATGGGCTTGACAGGGAGACCCGGCCCCATGGGCCCTCCTGGCAGCGGAGGTCTGAAGGGCGAGGCGGGCGATATGGGGCCTCAGGGTCCCCGAGGTGTGCAAGGCCCTCCCGGCCCATCAGGGAAGCCCGGAAGACGGGGCCGGGCTGGGAGTGACGGAGCAAGAGGCATGCCCGGACAAACGGGCCCCAAGGGCGACCGCGGCTTTGACGGCCTGGCCGGGTTGCCTGGCGAGAAGGGCCACAGGGGTGACCCTGGTCCTTCTGGCCCGCCCGGACCCCCGGGAGAGGATGGAGAAAGGGGTGACGATGGAGAAGTTGGGCCCAGAGGGCTGCCAGGGGAGCCGGGGCCACGTGGTCTGCTTGGGCCAAAGGGGCCCCCGGGCCCTCCAGGACCCCCCGGTGTGACGGGTATGGACGGTCAACCAGGCCCGAAAGGAAATGTGGGCCCCCAGGGAGAGCCCGGCCCCCCGGGACAGCAGGGCAACCCCGGTGCCCAGGGTCTTCCGGGCCCCCAGGGTGCCATCGGTCCTCCGGGAGATAAGGGTCCTTTGGGGAAGCCCGGACTTCCAGGAATGCCCGGTGCTGATGGACCCCCGGGGCACCCTGGCAAGGAAGGCCCTCCAGGAGAGAAAGGAGGCCAGGGTCCACCTGGTCCCCAGGGTCCCTTAGGCTACCCGGGCCCTCGAGGAGTCAAGGGGGCAGACGGCATCCGAGGTCTGAAGGGCACCAAGGGCGAGAAGGGCGAAGACGGCTTCCCTGGATTTAAAGGTGACATGGGCATCAAGGGCGATCGGGGGGAGATCGGCCCGCCTGGTCCCAGGGGTGAAGATGGCCCTGAAGGCCCAAAGGGCCGAGGCGGTCCCAATGGTGATCCAGGTCCCCTGGGGCCCCCTGGGGAGAAGGGCAAACTCGGAGTCCCAGGGTTACCTGGGTACCCAGGAAGACAAGGGCCAAAGGGTTCCATTGGATTCCCGGGATTCCCTGGTGCCAATGGAGAGAAGGGTGGCCGGGGGACGCCTGGAAAGCCCGGACCACGGGGACAGCGAGGCCCGACGGGCCCCCGGGGTGAAAGAGGCCCTCGGGGCATCACGGGGAAGCCCGGCCCCAAGGGCAACTCTGGAGGTGATGGTCCTGCTGGCCCTCCCGGTGAGCGGGGACCCAACGGACCCCAAGGACCTACCGGCTTCCCTGGACCAAAGGGTCCCCCGGGTCCCCCAGGGAAAGACGGGCTCCCCGGACACCCTGGACAGAGAGGCGAGACTGGCTTCCAAGGCAAGACTGGCCCGCCCGGTCCCCCAGGTGTGGTTGGCCCTCAGGGTCCCACGGGAGAAACGGGTCCAATGGGCGAGCGTGGCCACCCTGGGCCCCCCGGCCCTCCTGGTGAACAGGGGCTCCCAGGCCTTGCTGGCAAGGAGGGAACGAAGGGTGACCCAGGCCCAGCCGGCCTCCCTGGGAAGGACGGCCCTCCAGGCTTACGTGGCTTCCCTGGGGACCGAGGGCTCCCTGGCCCGGTGGGAGCCCTTGGGCTGAAAGGCAACGAAGGCCCCCCCGGCCCCCCGGGCCCCGCGGGATCTCCGGGGGAGAGAGGCCCTGCTGGCGCTGCTGGGCCCATCGGCATTCCAGGGAGACCCGGGCCACAGGGGCCGCCAGGGCCGGCTGGAGAGAAAGGGGCCCCGGGCGAGAAAGGCCCCCAAGGCCCAGCCGGCCGAGATGGGCTCCAGGGTCCTGTGGGGCTCCCCGGTCCAGCTGGCCCTGTGGGCCCCCCCGGTGAAGATGGAGACAAGGGAGAGATGGGGGAGCCGGGACAGAAAGGAAGCAAGGGAGACAAAGGCGAGCAGGGTCCCCCTGGGCCCACTGGTCCTCAAGGCCCCATCGGACAGCCAGGCCCCTCTGGCGCAGATGGGGAGCCGGGCCCCCGTGGCCAGCAAGGCCTCTTCGGGCAGAAAGGAGACGAAGGTTCGAGAGGTTTCCCTGGGCCCCCGGGGCCAGTGGGGTTGCAGGGCCTGCCGGGACCTGCGGGCGAAAAGGGCGAGACAGGAGACGTGGGCCAGATGGGCCCGCCTGGTCCCCCTGGCCCCCGAGGTCCTTCCGGAGCTCCAGGTGCTGATGGGCCTCAAGGTCCTCTGGGTGGAATCGGGAATCCGGGCGCAGTGGGCGAGAAGGGGGAGCCTGGCGAAGCCGGCGAGCCTGGCCTTCCGGGAGAAGGAGGCCCTCCGGGCCCTAAAGGAGAAAGAGGAGAGAAGGGCGAGGCCGGGCCCTCAGGAGCTGCTGGGCCCCCTGGCCCCAAAGGCCCGCCCGGAGACGACGGCCCCAAGGGCAGCCCTGGCCCTGTGGGTTTTCCTGGCGATCCTGGCCCCCCCGGAGAGCCTGGCCCCGCGGGTCAGGACGGTCCCCCTGGTGACAAAGGAGATGATGGTGAACCTGGACAGACGGGATCCCCGGGCCCCACTGGTGAGCCTGGTCCATCTGGGCCCCCGGGAAAGCGGGGACCCCCAGGCCCTGTGGGCCCCGAAGGCAGACAGGGAGAGAAAGGAGCCAAGGGAGAAGCCGGCTTGGAAGGCCCTCCTGGGAAGACTGGCCCCATCGGCCCACAGGGGGCCCCCGGGAAGCCTGGGCCTGATGGCCTGCGCGGGATCCCCGGCCCCGTGGGCGAGCAGGGTCTCCCCGGATCCCCAGGCCCGGATGGGCCACCCGGCCCCATGGGCCCCCCAGGACTCCCCGGCCTCAAAGGAGATTCTGGGCCCAAAGGCGAAAAGGGTCACCCAGGCCTGATTGGACTCATCGGCCCACCAGGGGAGCAGGGCGAGAAGGGTGACCGAGGGCTCCCTGGCCCCCAGGGCTCATCTGGCCCGAAAGGAGAACAGGGTATCACTGGTCCTTCTGGCCCCATTGGGCCCCCTGGACCCCCTGGCCTGCCGGGTCCGCCGGGTCCTAAAGGCGCTAAAGGCTCCTCGGGTCCCACCGGCCCGAAGGGTGAGGCAGGCCAGCCAGGACTTCCCGGCCCACCCGGCCCCCCGGGCGAGGTCATCCAGCCCCTGCCGATCCAGGCCTCGCGGACGCGGAGGAATATTGATGCCAGCCAGCTGCTGGATGACGGGGCGGGCGAGAGCTACATGGACTACGCAGATGGCATGGAGGAGATCTTCGGCTCACTCAACTCGCTGAAGCTGGAGATCGAGCAGATGAAGCGGCCGCTGGGCACGCAGCAGAACCCAGCGCGCACCTGCAAGGACCTGCAGCTCTGCCACCCTGACTTCCCTGACGGTGAATACTGGGTGGACCCCAACCAGGGCTGCTCCCGGGACTCCTTTAAAGTCTACTGCAACTTCACGGCCGGCGGGGCGACCTGCGTCTTCCCCGACAAGAAGTCCGAGGGGGCCAGGATCACTTCTTGGCCCAAAGAAAACCCGGGTTCCTGGTTCAGTGAATTCAAGCGTGGGAAACTGCTCTCCTATGTGGACGCAGAGGGAAACCCCGTGGGTGTGGTGCAGATGACCTTCCTGAGGCTGCTCAGTGCCTCCGCCCACCAGAACATCACCTACCACTGCTACCAGTCAGTGGCCTGGCAGGATGCCACCACGGGCAGCTATGACAAGGCCATGCGCTTCCTGGGCTCCAACGACGAGGAGATGTCTTATGACAACAACCCCTACATCCACGCCCTGGCGGATGGCTGCGCGACCAGGAAAGGCTACCAGAAGACGGTGCTGGAGATAGACACCCCCAAAGTGGAGCAGGTACCCATCGTGGACATCATGTTCAACGACTTCGGCGACGCAGCACAGAAGTTTGGATTTGAAGTGGGGCAGGCTTGCTTCATGGGCTAG

Related Sequences

XP_004849057.1 Protein

Col5a1 PREDICTED: collagen alpha-1(V) chain [Heterocephalus glaber]

Length: 1847 aa      View alignments
>XP_004849057.1
MDVHTRWKARGPPRPGAPPLSPLLLPFLLLLWAPPPSRAAQPADLLKVLDFHTLPDGITKTTGFCATRRSSKGPDVAYRVTKDAQLSAPTKQLYPASVFPEDFSILTTVKAKKGSQAFLVSIYNEQGIQQIGLELGRSPVFLYEDHTGKPGPEQYPLFRGINLSDGKWHRIALSVHKKNVTLILDCKKKTTKFLDRSDHPIVDVNGIIVFGTRILDEEVFEGDIQQLLFVSDHRAAYDYCEHYSPDCDTAAPDTPQSQDPNLDEYYPDGEGDGETYYYEYPYYEDSDDMGKEPAPTKTPVEAARETTEIPEELTPPPTAAPTVPDLVPETSEQAGGEEDPGIGDYEYVPIDDYYTPSPYEDLSYGEGLENPEQPTDPNSGPEVPTSTTVASNVSNPALSPGEGKDDLEGGFAEETLKNLDENYYDPYFDPDSNGSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTTGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGAKGPMVSAQESQAQAILQQARLALRGPVGPMGLTGRPGPMGPPGSGGLKGEAGDMGPQGPRGVQGPPGPSGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGEDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGDKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPLGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEMGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPAGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPLGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPVGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGQPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYMDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGATCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNITYHCYQSVAWQDATTGSYDKAMRFLGSNDEEMSYDNNPYIHALADGCATRKGYQKTVLEIDTPKVEQVPIVDIMFNDFGDAAQKFGFEVGQACFMG