Details from NCBI annotation

Gene Symbol Notch1
Gene Name notch 1, transcript variant X1
Entrez Gene ID 101704336

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NOTCH1 ENSCPOG00000012958 (Guinea pig)

Gene Details

notch 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011665, Guinea pig)

Protein Percentage 94.38%
CDS Percentage 90.74%
Ka/Ks Ratio 0.03819 (Ka = 0.0257, Ks = 0.6743)

NOTCH1 ENSG00000148400 (Human)

Gene Details

notch 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000277541, Human)

Protein Percentage 90.6%
CDS Percentage 88.6%
Ka/Ks Ratio 0.04577 (Ka = 0.0435, Ks = 0.9508)

Notch1 ENSMUSG00000026923 (Mouse)

Gene Details

notch 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000028288, Mouse)

Protein Percentage 91.03%
CDS Percentage 85.38%
Ka/Ks Ratio 0.03789 (Ka = 0.0439, Ks = 1.1597)

Notch1 ENSRNOG00000019322 (Rat)

Gene Details

notch 1 (Notch1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026212, Rat)

Protein Percentage 91.27%
CDS Percentage 86.05%
Ka/Ks Ratio 0.03761 (Ka = 0.042, Ks = 1.1154)

Genome Location

Sequence Coding sequence

Length: 7680 bp    Location: 1676314..1636331   Strand: -
>XM_004848930.1
ATGCCGAGGCTCCCGGCCCCCCTGGTGTGCCTGGCGCTGCTGCCTGCGCTCGCTGCTAGAGGCCTGCGCTGCTCCCAGCCCGGCGTGACTGCCTGCCAGAACGGTGGGAGGTGTGAAGTGCACAACGACACAGAGGCCTGCGTCTGCATCGGGCCCTACGTGGGCCAGCTATGCCAGGACCGCAACCCCTGCCTCAGCAACCCCTGCAAGAATGCTGGGACCTGCCACGTGCTGGACCGGGGCGCCACCGTGGACTACACCTGCAGCTGCTCCCTGGGGTTCTCCGGGCCCCTCTGTCTGACGCCCCTGGACAACGCCTGCCTGTCTGGGCCCTGCCGCAACGGGGGCACCTGTGACCTGCTCACGCTCACAGAGTACAAGTGCCGCTGCCCCCCCGGCTGGTCAGGGAAGTCGTGCCAGCAGGCTGACCCGTGTGCCTCCAACCCCTGTGCCAATGGTGGCCACTGCTTGCCCTTTGAGGCCTCCTACATCTGCGGCTGCCGGCCCGGCTTCCATGGCCCCACCTGCCGCCAGGACGTGAACGAGTGCAGCCAGACACCGGGGCTGTGCCGCCACGGGGGCACCTGCCACAACGAGGTGGGCTCCTTCCGCTGCGCCTGCCGCCCCACACACACCGGCACCCACTGCGAGCTGCCCTACGTTCCCTGCAGCCCCTCGCCCTGCCAGAACGGGGGGACCTGCCGCCCCACAGGGGAGACCACCCACGAGTGTGCCTGCCTGCCAGGCTTCACTGGCCAGAACTGCGAGGAGAATGTGGATGACTGCCCAGGAAACAGCTGCAGGAACGGGGGTGCCTGTGTGGATGGTGTGAACACCTACAACTGCCGCTGCCCGCCAGAGTGGACAGGTCAGTACTGCACGGAGGACGTGGACGAGTGCCAGCTCATGCCCAATGCCTGCCAGAACGGGGGCACCTGCCACAACACCCACGGTGGCTACAACTGTGTGTGTGTCAATGGCTGGACGGGTGAGGACTGCAGCGAGAACATCGACGACTGCGCCAGTGCCGCCTGCTTTAATGGCGCCACCTGCCACGACCGTGTGGCTTCCTTCTACTGCGAGTGTCCCCATGGCCGCACCGGCCTGCTGTGCCACCTGAATGATGCCTGCATCAGCAACCCCTGCAACGAGGGCTCCAACTGTGACACCAACCCTGTCAATGGCAAGGCCATCTGCACCTGCCCCTCAGGCTACACAGGGCCGGCCTGCAGCCAGGATGTGGATGAATGCGCGCTGGGTGCCAACCCCTGTGAGCATGCGGGCAAGTGCATCAACACCCTGGGCTCCTTCGAGTGCCAGTGTCTGCAGGGCTACACTGGCCCCCGCTGTGAGATCGACGTCAACGAGTGCATCTCCAACCCGTGTCAGAATGACGCCACCTGCCTTGACCAGATCGGGGAGTTCCAGTGCATCTGCATGCCCGGCTATGAGGGGGTGTACTGCGAGGTCAACACAGATGAGTGCGCCAGCAGCCCCTGCCTGCACAACGGACGCTGTCTGGACAGGGTCAGCGAGTTCCTGTGCGAGTGTCCCACCGGCTTCAGCGGGCATCTGTGTCAGCACGACGTGGACGAGTGTGCCAGCACGCCCTGCAGGAACGGTGCCAGGTGTCTGGATGGGCCCAACACCTACACTTGCGTGTGCACAGAAGGGTACACAGGGACACACTGCGAGGTGGACATCAACGAGTGCGAGCCTGACCCCTGCCACTACGGCTCCTGCAAGGATGGCATCGCTGCCTTCACCTGCCTGTGCCAGCCGGGCTACACCGGCCACCACTGTGAGACCAACATCAACGAGTGTGCCAGCCAGCCCTGCCACCACGGGGGCACCTGCCAGGACCGCGACAATGCCTACCTCTGCCTCTGCCTCAAGGGCACCACAGGACCCAACTGTGAGATCAACCTGGACGACTGCACTAGCAGCCCCTGCGATGCGGGCACCTGCCTGGACAAGATCGATGGCTACGAGTGTGCCTGCGAGCCGGGCTACACAGGGAGCATGTGCAACATCAACATCGACGAGTGCGCGGGCAGCCCCTGCCACAACGGGGGCACCTGCGAGGACGGCGTCAACGGCTTCACCTGCCATTGCCCCGAGGGCTACCACGACCCCACGTGCCTGTCCGAGGTCAACGAGTGCAGCAGCAACCCCTGCATACACGGGACCTGCCGGGACAGCCTCAACGGGTACCAGTGTGACTGTGACCCCGGGTGGAGCGGGACGAACTGTGACATCAACAACAACGAGTGCGAGTCTAACCCGTGCGTGAATGGCGGCACCTGCAGAGACATGACCAGCGGCTACGTGTGCACGTGCTGGGAGGGCTTCAGCGGCCCCAACTGCCAGACCAACATCAATGAGTGCGCGTCCAACCCGTGTCTGAACCAGGGCACGTGCATCGACGACGTGGCCGGGTACAAGTGCAACTGCCCGCTGCCCTACACAGGAACCAAGTGTGAGCTGGTGCTGGCCCCGTGTGCTCCCAGCCCCTGCAAGAACAGCGGAGTGTGCAGGGAGTCCGAGGACTATGAGAGCTTTTCCTGTGTCTGTCCCAGCGGCTGGCAGGGGCAGACCTGCGAGGTCGACATCAACGAGTGTGTGAAGAGCCCGTGCCGCAATGGTGCGTCCTGTCAGAACACCAACGGGGACTATCGGTGCCACTGCCAGGCCGGCTACACGGGGCGCGACTGCGAGGCTGATGTGGACGACTGCCGGCCCAACCCCTGTCACAATGGGGGCTCCTGCACCGATGGCGTCAATGTGGCCTTTTGCGACTGCCTGCCCGGCTTCCAGGGCGCCTTCTGCGAGGAGGACATCAACGAGTGTGCCAGCAGCCCCTGTCGCAATGGCGCCAACTGCACCGACTGTGTGGACAGCTACACGTGCACCTGCCCTGCGGGCTTCAACGGCATCCACTGTGAGAACAACACGCCTGACTGCACGGAGAGCTCCTGCTTCAATGGTGGCACCTGCGTGGATGGCATCAATTCCTTCACCTGCCTGTGTCCGCCCGGCTTCACGGGCAGCTACTGCCAGCACGACATCAACGAGTGCGACTCAAGGCCCTGCCTGCATGGTGGCACCTGCCAGGACAGCTACGGCACCTACAAGTGCACCTGCCCACAGGGCTACACCGGCCTCAACTGCCAGAACCTCGTGCGCTGGTGTGACTCCTCCCCCTGCAAAAATGGGGGCCAGTGCTGGCAGACCAGCACCCTGTACCGCTGCGAGTGCCACAGCGGCTGGACCGGCCTCTACTGCGATGTGCCCAGCGTCTCCTGCGAGGTAGCCGCAAAGCAGCAAGGCATCGATGTCACCCACCTGTGCCAGCACGGAGGACTCTGTGTGGATGCGGGCAACACCCACCACTGCCGCTGCCAGGCCGGCTACACGGGCAGCTACTGCGAAGAAGAGGTGGACGAGTGCTCACCTAGCCCCTGCCAGAATGGGGCCACCTGCACTGACTACCTGGGTGGCTACTCCTGCAAGTGCATGGCTGGCTACCATGGGGCCAACTGCTCCGAGGAGATCAACGAGTGCCTGTCCCAACCCTGCCAGAATGGAGGCACCTGCATCGACCTCACCAACACCTACAAGTGCTCCTGCCCACGGGGCACGCAGGGTGTGCACTGCGAGATCAACGTGGACGACTGCAGCCCGCTCCTCGATCCCGCTTTCCGCAGCCCCAAGTGCTTCAACAACGGCACCTGCGTGGACCAGGTGGGCGGCTACACCTGCACCTGCCCGCCTGGCTTCGTGGGCGAGCGGTGCGAGGGCGACGTCAATGAGTGCCTGTCCAACCCGTGTGACCCTCGCGGCACCCAGAACTGTGTGCAGCGCGTCAACGACTTCCACTGCGAGTGCCGCGCGGGCCACACCGGGCGCCGCTGCGAGTCGGTCATCGATGGCTGCAAGGGGAAGCCCTGCAAGAACGGGGGTGCCTGTGCCGTGGCTGCCAACACCGCCCGCGGCTTCATCTGCAGGTGCCCCGCGGGCTTCGAGGGCGCCACTTGCGAGAACGATGCGCGGACTTGCGGCAACCTGCGCTGCCTCAACGGCGGCACATGCATCTCGGGCCCGAGAAGCCCCACCTGCCTGTGCCTGGGCACCTTCACGGGCCCCGAGTGCCAGTTCCCGGCCAGCAGCCCCTGCGTAGGTGGCAATCCCTGCTACAACCAGGGCACCTGCGAGCCCACGGCCGAGAGCCCCTTCTACCGCTGCCTGTGCCCCGCCAAGTTCAACGGGCTCCTGTGCCACATCCTGGACTACAGCTTTGCAGGTGGCACTGGGCGTGACATCCCCCCGCCGCAAGTGGAAGAGGCCTGCGAGCTGCCCGAGTGCCAGGAGGACGCGGGCAACAAGGTCTGCAGCCTGCAGTGCAACAACCACGCCTGTGGCTGGGACGGCGGCGACTGCTCGCTCAACTTCGACGACCCCTGGAAGAACTGCTCCCAGTCCCTGCAGTGCTGGAAGTACTTCAGCGACGGCCACTGCGACAGCCAGTGCAACTCGGCTGGCTGCCTCTTTGACGGCTTCGACTGCCAGCACACGGAGGGCCAGTGCAACCCCCTGTACGACCAGTACTGCAAGGACCACTTCAGTGACGGGCACTGCGACCAGGGCTGCAACAGCGCGGAGTGTGAGTGGGATGGGCTGGATTGTGCGGAGCACGTGCCTGAGCGGCTGGCGGCCGGCGCGCTGGTGGTGGTGGTGCTGCTGCCTCCCGAGCAGCTTCGCAACAACTCCTTCCACTTCCTGCGCGAGCTCAGCCGCGTACTGCACACCAACGTGGTCTTCAAGCGCGACGCTCAGGGCCAGCAGATGATCTTCCCCTACTACGGCCGTGAGGAGGAGCTGCACAAGCACCCCATCAAGCGCTCTGCCACAGGCTGGGCCCCGCCGGGTGCCCTCCTTGGCCAGGCTGCCGCCTCGCTGCTCCCCAGCAGGGCAAGCAGGCGCCGGCGCAGAGAGCTGGACCCCATGGACGTCCGCGGATCCATCGTCTACCTGGAGATCGACAACCGGCAGTGCGTGCAGTTGTCCTCGCAGTGCTTCCAGAGTACCACCGACGTGGCCGCATTCCTGGGTGCGCTCGCCTCGCTGGGCAACCTCAACCTCCCCTACAAGATCGAGGCCGTGCAGAGTGAGACAGTGGAGCCGCCGGCGCCCTCACAGCTGCACCTCATGTACCTGGTCGGGGCCGCCTTCGTGCTCCTCTTCTTCGTGGGCTGCGGGGTGCTGTTGTCCCGCAAGCGCCGGCGCCAGCATGGCCAGCTCTGGTTCCCCGAGGGCTTCAAGGTGTCGGAGGCCAGCAAGAAGAAGCGACGAGAGCCCCTCGGCGAGGACTCCGTGGGCCTCAAGCCCCTGAAGAACATGTCGGACGGCGCCCTCATGGATGACAACCAGAATGAGTGGGGGGACGAGGACCTGGAGGGCAAGAAGTTTCGGTTTGAGGAACCGGTGGTTCTTCCTGACCTGGATGACCAGACGGACCACCGGCAGTGGACCCAGCAGCATCTGGACGCCGCCGACCTGCGTGTGTCTGCCATGGCACCCACACCGCCGCAGGGCGAGGTCGACGCTGACTGCATGGATGTGAATGTGCGCGGGCCTGATGGCTTCACCCCGCTCATGATCGCCTCCTGCAGCGGAGGGGGCCTGGAGACGGGCAACAGCGAGGAGGAGGAGGATGCGCCGGCCGTCATCTCCGACTTCATCTACCAGGGTGCCAGCCTGCACAACCAGACCGACCGCACCGGCGAGACCGCCCTGCACCTGGCTGCGCGCTACTCACGCTCTGACGCTGCCAAGCGCCTGCTGGAGGCCAGTGCGGATGCCAACATCCAGGACAATATGGGACGCACCCCGCTGCACGCGGCCGTGTCTGCTGATGCACAGGGTGTCTTCCAGATCCTGATCCGGAACCGAGCCACGGACCTAGATGCCCGCATGCACGACGGCACGACGCCGCTGATCCTGGCGGCCCGCCTGGCCGTGGAGGGCATGCTGGAGGACCTCATCAACTCGCACGCCGACGTCAATGCCGTGGATGACCTGGGCAAGTCGGCCCTGCACTGGGCTGCCGCTGTGAACAACGTGGATGCTGCGCTGGTGCTGCTGAAGAACGGGGCCAACAAGGACATGCAGAACAACAAGGAGGAGACACCTCTGTTCCTGGCCGCCCGGGAGGGCAGCTATGAGACTGCCAAGGTGCTGCTGGACCACTTTGCCAACCGGGACATCACTGACCACATGGACCGCCTGCCGCGGGACATTGCCCAGGAGCGCATGCACCACGACATCGTGCGGCTCCTGGATGAGTACAACCTGGTGCGCAGTCCCCAGCTGCACGGCGCCGGCCTGAGTGGCACGCCTACCCTGTCACCCACACTCTGCTCACCCAACGGCTACCTGGGCAACCTCAAGCCTGCTGTGCAGGGCAAGAAGGCCCGCAAGCCCAGCACCAAGGGCCTGACCTGCAGCGCCAAGGAGGCCAAAGACCTCAAGGCACGGAGGAAGAAGTCGCAGGACGGCAAGGGCTGCCTGCTGGACAGTTCGAGCATGCTGTCGCCCGTGGACTCGCTGGAGTCACCCCACGGCTACTTGTCGGATGTGGCTTCACCGCCCCTCCTGCCCTCCCCATTCCAGCAGTCTCCATCCCTGCCTCTCGGTCACTTGCCCGGCATGCCCGACACCCACCTGGGCATCAACCACCTGAATGTGGCAGCCAAGCCCGAGATGGCGGCGCTGGGTGGGGGTGGCCGGCTGGCCTTTGAGCCCGGGCCCCCGCGCCTCTCCCACCTGCCGGTGGCCTCCAGCACCAGCACGGTCCTGGGCACCAGCGGCAGCGGGGCTGCGAATTTCACCGTGGGCACAGCGGCCGGCCTGAATGGCCAGTGCGAGTGGCTGTCCCGGCTGCAGAACGGCATGGTCTCTGGCCAGTACAACCCACTGCGGGGAGCGGTGGCCCCAGGCACACCCAGCACGCAGGCCCCCGCCCTGCAGCATGGCATGATGGGCCCACTGCACAGCAGCCTCTCTGCCAACACCCTGTCCCAGATGATCAGCTACCAGGGCCTGCCCTCCACGCGGCTGGCCACCCAGCCCCACCTGGTGCAGGCCCAGCAGGTACCTCAGGTGCAGCAGCAAAACTTACAGGTGCAGCCACCAGGCCTTCAGCCACCACCAAATATCCAGCAACCGCAGGGTCTGCAGCCGCCGCCACCATCGCAACCACACCTCGGTGTGGGCTCAGTGGCCAATGGGCACCTGGGCCGCAGCTTCCTGGGTGGGGAGCCGAGCCAGGCGGACGTGCAGCCACTGGGCCCCAGCAGTCTGACCGTGCACACCATCCTGCCCCAGGAGGGCCAGAACCTGCCCACGCCGCTGCCGGCTTCACTGGTCCCGCCCATGACCACAGCCCAGTTCCTGACCCCGCCCTCCCAGCACAGCTACTCCTCCTCACCCGTGGACAGCACCCCCAGCCACCAGCTGCAGGTGCCGGAGCACCCCTTCCTCACCCCGTCCCCTGAGTCCCCCGACCAGTGGTCAAGCTCGTCGCCACAGTCCAACATCTCCGACTGGTCCGAGGGCGTCTGCAGCCCACCCACCAGCATGCAGTCCCAGATCGCCCACATTCCAGAGGCGTTCAAGTAA

Related Sequences

XP_004848987.1 Protein

Notch1 PREDICTED: neurogenic locus notch homolog protein 1 isoform X1 [Heterocephalus glaber]

Length: 2559 aa      View alignments
>XP_004848987.1
MPRLPAPLVCLALLPALAARGLRCSQPGVTACQNGGRCEVHNDTEACVCIGPYVGQLCQDRNPCLSNPCKNAGTCHVLDRGATVDYTCSCSLGFSGPLCLTPLDNACLSGPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGHCLPFEASYICGCRPGFHGPTCRQDVNECSQTPGLCRHGGTCHNEVGSFRCACRPTHTGTHCELPYVPCSPSPCQNGGTCRPTGETTHECACLPGFTGQNCEENVDDCPGNSCRNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFNGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECALGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEVNTDECASSPCLHNGRCLDRVSEFLCECPTGFSGHLCQHDVDECASTPCRNGARCLDGPNTYTCVCTEGYTGTHCEVDINECEPDPCHYGSCKDGIAAFTCLCQPGYTGHHCETNINECASQPCHHGGTCQDRDNAYLCLCLKGTTGPNCEINLDDCTSSPCDAGTCLDKIDGYECACEPGYTGSMCNINIDECAGSPCHNGGTCEDGVNGFTCHCPEGYHDPTCLSEVNECSSNPCIHGTCRDSLNGYQCDCDPGWSGTNCDINNNECESNPCVNGGTCRDMTSGYVCTCWEGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCPLPYTGTKCELVLAPCAPSPCKNSGVCRESEDYESFSCVCPSGWQGQTCEVDINECVKSPCRNGASCQNTNGDYRCHCQAGYTGRDCEADVDDCRPNPCHNGGSCTDGVNVAFCDCLPGFQGAFCEEDINECASSPCRNGANCTDCVDSYTCTCPAGFNGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDINECDSRPCLHGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGQCWQTSTLYRCECHSGWTGLYCDVPSVSCEVAAKQQGIDVTHLCQHGGLCVDAGNTHHCRCQAGYTGSYCEEEVDECSPSPCQNGATCTDYLGGYSCKCMAGYHGANCSEEINECLSQPCQNGGTCIDLTNTYKCSCPRGTQGVHCEINVDDCSPLLDPAFRSPKCFNNGTCVDQVGGYTCTCPPGFVGERCEGDVNECLSNPCDPRGTQNCVQRVNDFHCECRAGHTGRRCESVIDGCKGKPCKNGGACAVAANTARGFICRCPAGFEGATCENDARTCGNLRCLNGGTCISGPRSPTCLCLGTFTGPECQFPASSPCVGGNPCYNQGTCEPTAESPFYRCLCPAKFNGLLCHILDYSFAGGTGRDIPPPQVEEACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFDDPWKNCSQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQHTEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGALVVVVLLPPEQLRNNSFHFLRELSRVLHTNVVFKRDAQGQQMIFPYYGREEELHKHPIKRSATGWAPPGALLGQAAASLLPSRASRRRRRELDPMDVRGSIVYLEIDNRQCVQLSSQCFQSTTDVAAFLGALASLGNLNLPYKIEAVQSETVEPPAPSQLHLMYLVGAAFVLLFFVGCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSVGLKPLKNMSDGALMDDNQNEWGDEDLEGKKFRFEEPVVLPDLDDQTDHRQWTQQHLDAADLRVSAMAPTPPQGEVDADCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAALVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLHGAGLSGTPTLSPTLCSPNGYLGNLKPAVQGKKARKPSTKGLTCSAKEAKDLKARRKKSQDGKGCLLDSSSMLSPVDSLESPHGYLSDVASPPLLPSPFQQSPSLPLGHLPGMPDTHLGINHLNVAAKPEMAALGGGGRLAFEPGPPRLSHLPVASSTSTVLGTSGSGAANFTVGTAAGLNGQCEWLSRLQNGMVSGQYNPLRGAVAPGTPSTQAPALQHGMMGPLHSSLSANTLSQMISYQGLPSTRLATQPHLVQAQQVPQVQQQNLQVQPPGLQPPPNIQQPQGLQPPPPSQPHLGVGSVANGHLGRSFLGGEPSQADVQPLGPSSLTVHTILPQEGQNLPTPLPASLVPPMTTAQFLTPPSQHSYSSSPVDSTPSHQLQVPEHPFLTPSPESPDQWSSSSPQSNISDWSEGVCSPPTSMQSQIAHIPEAFK