Details from NCBI annotation

Gene Symbol Pmpca
Gene Name peptidase (mitochondrial processing) alpha, transcript variant X2
Entrez Gene ID 101701124

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PMPCA ENSCPOG00000007258 (Guinea pig)

Gene Details

peptidase (mitochondrial processing) alpha

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006539, Guinea pig)

Protein Percentage 92.22%
CDS Percentage 89.43%
Ka/Ks Ratio 0.09897 (Ka = 0.0425, Ks = 0.429)

PMPCA ENSG00000165688 (Human)

Gene Details

peptidase (mitochondrial processing) alpha

External Links

Gene Match (Ensembl Protein ID: ENSP00000360782, Human)

Protein Percentage 90.08%
CDS Percentage 85.88%
Ka/Ks Ratio 0.07261 (Ka = 0.0489, Ks = 0.6734)

Pmpca ENSMUSG00000026926 (Mouse)

Gene Details

peptidase (mitochondrial processing) alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000075762, Mouse)

Protein Percentage 89.31%
CDS Percentage 82.63%
Ka/Ks Ratio 0.06503 (Ka = 0.0586, Ks = 0.9016)

Pmpca ENSRNOG00000026775 (Rat)

Gene Details

peptidase (mitochondrial processing) alpha (Pmpca), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000037642, Rat)

Protein Percentage 90.08%
CDS Percentage 83.33%
Ka/Ks Ratio 0.0603 (Ka = 0.0534, Ks = 0.8851)

Genome Location

Sequence Coding sequence

Length: 1575 bp    Location: 1568708..1576272   Strand: +
>XM_004848919.1
ATGGCGGTGGCGGTCCTGGTGGCAGCGCGGCTGCTGCGCGGCTCCGGGTACTGGGGCCGGCGGTCGAGATTTGGACTCCCCGCACACAGGCAGTTTAGTAGTGGAGGCGCCTACGCCAACATCCCCCTCTCTACTCCCTTGCCTGGAGTACCCAAGCCTATTTTTGCTACCCTTGACGGACAGGAAAAGTTTGAAACCAAAGTTACCACACTGGATAATGGGCTCCGTGTGGCGTCTCAGAATAAATTTGGACAGTTTTGTACGGTGGGAATTCTTATTAATTCAGGATCAAGATACGAAGCAAAATACATCAGCGGGCTTGCTCACTTTTTGGAGAAATTGGCATTTTCGTCTACTGCTCGATTTGACAGCAAAGATGAGATTCTGCTCACCCTGGAGAAGCATGGGGGCATCTGCGACTGCCAGACCTCCAGAGACACGACCATGTATGCCGTGTCTGCTGACAGCAGAGGCTTAGACACCGTGGTGGGCTTGCTGGCTGACGTGGTTCTGCAGCCTCGCCTGACAGATGAGGAGCTGGAAATGACACGGATGGCTGTCCAGTTCGAGCTGGAAGACCTGAACATGCGGCCCGACCCGGAACCACTGCTCACTGAGATGATCCACGAGGCTGCTTACCGAGGGAACACGGTGGGCCTCCACCGATTTTGCCCCTCAGAGAACATCGCAAGGATTGACCGGGAAATGCTTCATTCCTACCTGAGGAACTACTACACGCCTGCACGCATGGTGCTGGCCGGCGTGGGCGTGGAGCACGACCGCCTGGTGGAGTCCGCCACTAAGCACCTCCTGGGGGTGCAGCCCGCCTGGGGGGACACGGGGGCTGTGGATGTGGACAGATCCGTGGCGCAGTTCACTGGTGGGATCGTCAAGCTGGAGAGGGACATGTCCAATGTCAGCCTGGGCCCAACCCCCATCCCCGAGCTCACGCACATCATGGTGGGCCTCGAGAGCTGCTCCTTCCTGGAGGAGGACTTCATCCCCTTTGCCGTGCTGAACATGATGATGGGAGGCGGCGGCTCCTTCTCAGCTGGCGGCCCAGGCAAGGGCATGTTCTCCAGGCTCTACCTCAACGTGCTCAACAGGCACCACTGGATGTACAACGCCACCTCCTACCACCACAGCTACGAGGACACCGGCCTCCTGTGCATTCATGCCAGTGCTGACCCAAGACAGGTTCGAGAAATGGTAGAAATCATCACGAAGGAATTTATCCTGATGGGTGGAACTGTGGACACGGTTGAGCTGGAGCGGGCCAAGACACAGTTGATGTCCATGCTCATGATGAACCTGGAGTCCAGACCCGTGATCTTCGAGGATGTGGGGCGGCAGGTGCTGGCCACCCACTCCCGAAAGCTGCCACACGAGCTCTGCGCGCTCATCCGTGACGTGAAGCCGGAGGACATCAAGCGGGTCGCTGCAAAGATGCTGCGCGGGAAGCCTGCGGTGGCGGCCCTGGGCAGCCTAAGCGGCCTGCCCAGCTACGAGCACATCCAGGCTGCACTGTCGAGCCGGGACGGGCGCCTGCCCAGGATGTACCGGCTCTTCCGGTAG

Related Sequences

XP_004848976.1 Protein

Pmpca PREDICTED: mitochondrial-processing peptidase subunit alpha isoform X2 [Heterocephalus glaber]

Length: 524 aa      View alignments
>XP_004848976.1
MAVAVLVAARLLRGSGYWGRRSRFGLPAHRQFSSGGAYANIPLSTPLPGVPKPIFATLDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYISGLAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSRGLDTVVGLLADVVLQPRLTDEELEMTRMAVQFELEDLNMRPDPEPLLTEMIHEAAYRGNTVGLHRFCPSENIARIDREMLHSYLRNYYTPARMVLAGVGVEHDRLVESATKHLLGVQPAWGDTGAVDVDRSVAQFTGGIVKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCALIRDVKPEDIKRVAAKMLRGKPAVAALGSLSGLPSYEHIQAALSSRDGRLPRMYRLFR