Sequence details NCBI ID: XM_004848692.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cacna1b
Gene Name calcium channel, voltage-dependent, N type, alpha 1B subunit, transcript variant X1
Entrez Gene ID 101697609

Database interlinks

Part of NW_004624760.1 (Scaffold)

For more information consult the page for NW_004624760.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CACNA1B ENSCPOG00000004438 (Guinea pig)

Gene Details

calcium channel, voltage-dependent, N type, alpha 1B subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004005, Guinea pig)

Protein Percentage 93.48%
CDS Percentage 90.55%
Ka/Ks Ratio 0.09952 (Ka = 0.0365, Ks = 0.3671)

CACNA1B ENSG00000148408 (Human)

Gene Details

calcium channel, voltage-dependent, N type, alpha 1B subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000360423, Human)

Protein Percentage 92.67%
CDS Percentage 88.76%
Ka/Ks Ratio 0.06528 (Ka = 0.0376, Ks = 0.5753)

Cacna1b ENSMUSG00000004113 (Mouse)

Gene Details

calcium channel, voltage-dependent, N type, alpha 1B subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037416, Mouse)

Protein Percentage 92.29%
CDS Percentage 86.74%
Ka/Ks Ratio 0.0605 (Ka = 0.0402, Ks = 0.664)

Cacna1b ENSRNOG00000004560 (Rat)

Gene Details

calcium channel, voltage-dependent, N type, alpha 1B subunit (Cacna1b), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006162, Rat)

Protein Percentage 91.77%
CDS Percentage 86.47%
Ka/Ks Ratio 0.06209 (Ka = 0.0429, Ks = 0.6908)

Genome Location

Sequence Coding sequence

Length: 6957 bp    Location: 257787..78754   Strand: -
Raw sequence   
>XM_004848692.1
ATGGTCCGCTTCGGGGACGAGCTGGGCGGCCGCTATGGGGGCGCGAGCGGCGGGGAGCGGGCCCGGGGCGGCGGGGCCGGGGGCGCGGGCGGCCCAGGCCCCGGAGGGCTGCAGCCCGGCCAGCGGGTGCTCTACAAGCAGTCGATCGCGCAGCGTGCGCGGACCATGGCACTGTACAACCCCATCCCGGTCAAGCAGAACTGCTTCACCGTCAACCGCTCGCTCTTCGTCTTCAGCGAGGACAACGTCGTCCGAAAATACGCCAAGCGCATCACCGAGTGGCCTCCTTTCGAGTACATGATCCTGGCCACCATCATCGCCAACTGCATTGTGCTGGCTCTGGAGCAGCACCTCCCTGACGGCGACAAGACGCCCATGTCCGAGCGCCTGGATGACACAGAACCCTATTTCATTGGCATTTTCTGCTTTGAGGCGGGGATCAAGATCATCGCTCTGGGCTTCGTTTTCCACAAGGGCTCCTACCTTCGGAACGGCTGGAACGTCATGGACTTCGTGGTGGTCCTCACAGGGATCCTTGCCACGGCTGGAACTGACTTTGACCTGCGCACACTGAGGGCTGTGCGTGTGCTAAGGCCCCTGAAGCTGGTGTCTGGGATCCCAAGTTTACAGGTGGTGCTCAAGTCCATCATGAAGGCCATGGTTCCGCTGCTGCAGATCGGGCTGCTTCTCTTCTTCGCCATCCTCATGTTTGCCATCATTGGCCTCGAGTTCTACATGGGGAAATTCCACAAGGCCTGTTTCCCCAACAGCACAGATGCGGACCCTGTCGGTGACTTCCCCTGTGGCAAGGACGCCCCAGCCCGGCTTTGTGAGGGTGACACCGAGTGCCGGGAGTACTGGCCGGGACCCAACTTTGGCATCACCAACTTTGACAACATCCTGTTTGCCATCTTGACCGTGTTCCAGTGCATCACTATGGAGGGCTGGACCGACATCCTCTACAATACAAATGATGCAGCTGGCAATACCTGGAACTGGCTCTACTTCATCCCTCTCATCATCATTGGCTCCTTCTTCATGCTCAACCTGGTGCTGGGAGTGCTCTCAGGAGAGTTTGCCAAGGAGCGAGAACGGGTGGAAAATCGCCGCGCCTTCCTGAAGCTGCGCCGGCAGCAGCAGATCGAGCGGGAGCTGAACGGGTACCTGGAGTGGATCTTCAAGGCTGAGGAAGTCATGCTGGCTGAGGAGGATAAGAACGCGGAGGAGAAGTCCCCCTTGGATGTGTTGAAGAGAGCTGCCACCAAGAAGAGCCGAAACGACCTGATCCATGCAGAGGAGGGTGAGGACCGATTTGCAGATCTCTGTGCGGTCGGGTCCCCCTTCACCCGGACTAGCCTGAAGAGTGGAAAGACAGAGAGCTCGTCATACTTTCGGAGGAAGGAGAAGATGTTCCGGTTCTTCATCCGACGCATGGTGAAGGCGCAGAGCTTCTACTGGGTGGTGCTGTGTGTGGTGGCCCTGAATACACTGTGTGTGGCCATGGTGCACTACAACCAGCCGCAGCGGCTCACCACAGCACTGTACTTTGCAGAGTTTGTTTTCCTGGGTCTCTTCCTCACCGAGATGTCCTTGAAGATGTATGGCCTGGGGCCCAGAAGCTACTTCCGGTCTTCCTTCAACTGCTTTGATTTTGGGGTCATCGTGGGGAGCATTTTTGAAGTGGTGTGGGCTGCCATCAAGCCAGGAACCTCCTTTGGGATCAGCGTGCTGCGGGCACTCCGGTTGCTGAGGATCTTCAAAGTCACAAAGTACTGGAACTCCCTGCGGAACCTGGTGGTGTCTCTGCTCAACTCCATGAAGTCCATCATCAGCCTCCTGTTCCTGCTCTTCTTGTTCATCGTGGTCTTTGCTCTGCTTGGGATGCAGCTCTTTGGGGGACAGTTCAACTTTAAAGATGAGACTCCAACAACCAACTTTGACACCTTTCCCGCTGCCATCCTCACTGTCTTCCAGATCCTGACAGGAGAGGACTGGAATGCAGTGATGTATCATGGGATCGAATCGCAAGGTGGGGTCAGCAAAGGCATGTTCTCCTCCTTTTACTTCATCGTCCTGACGCTGTTTGGAAACTATACCCTGCTGAATGTCTTCCTGGCCATAGCTGTGGACAACCTTGCCAACGCCCAGGAACTGACCAAGGATGAAGAGGAGATGGAAGAAGCAGCCAATCAGAAGCTTGCCCTGCAGAAAGCCAAAGAAGTTGCTGAAGTCAGCCCCATGTCTGCCGCCAACATCTCCATTGCTGCCAGGCAGCAGAACTCGGCCCGGGCACGGTCCGTGTGGGAGCAGCGAGCCAGCCAGCTGCGGCTACAGAACCTGCGGGCCAGCTGTGAGGCACTGTACAGTGAGATGGACCCCGAGGAGCGACTACGGTATGCCACCTCACGCCACTTGCGGCCCGACATGAAGACGCACCTGGACCGGCCTCTGGTGGTGGAGCACAGCCGAGATGGACCTCGGGGTCCCACCGGTGGCAAAGCCCAGTCCGAGGCCACGGAGGCTATGGACCCACCTCGACGGCACCACCGGCACCGAGACAGGGACAAGGCCCCCACCACACTGCCCTCAGCCAGTGAGCAGGCCCAGGACCAGGCAGGTGCACAGAGAGCAGACCGGATGGACGGCGCGGAGCCAGGGGCCCGGGGGGAGCATGCGCGCCCCCGCCACAGCCGCAGCAAGGAGGCCACCGGTGGCCAGGAGGCCCGGGGGGAGCGCAGCCGGGGCCCTGAGGGCGGCAGGCGCCACCACCGCATGCACCGGCATGGGCCCGACCCGAGCAAGGACAAGGACAAGGACGGTCCTGTGGCCAAGGGCGAGCGGCGAGCTCGGCACCGGGGGCCCCGTGCAGGGCCCAAGGAGGCAGAAAGTGGCGAGGAGCCTGGGCGCCGGCACCGAGCGCGGCACAAGGCACCACCCACGCAGGAGGCCATGGAGAAGGAGGGCGAGGGCCCCGAAGGGGACCAGGAGGTCCGGAGCCGCCAGCTCAAGGACCCTCCCTGTGACCTGGAGGCCCGTGGGGTGATGGGTGTGGACCCTGTGCATGCACTCCCCAGCACCTGTCTTCAGAAGGTGGAGGAACAACCAGAGGATGCAGATAATCAGCGGAATGTCACTCGGATGGGCAGTCAACCCTCAGACCCAAGCACCGCTGTGCATGCCCCAGTAACACTGACAGACCCTGCTGGGGAGACCACAGCAGTTCCCAGTGGTAACGTGGACCTGGAAAGCCAAGCAGAGGGGAAGAAGGAAGTGGAAGCTGATGATATGCTGAGGAGTGGCCCCCGGCCCATTGTTCCGTACAGCTCCATGTTCTGTCTAAGCCCCACTAACCTGCTCCGTCGCTTCTGCCATTCCATTGTGACGATGCGCTACTTCGAGACGGTCATCCTTGTGGTCATTGCCCTGAGCAGCATCGCCCTGGCTGCCGAGGACCCTGTGCGGACAGACTCGTCCAGAAACAATGCTCTGAAGTACATGGATTACATCTTCACAGGTGTCTTCACTTTTGAGATGGTGATAAAGATGATTGACTTGGGGCTGTTACTTCACCCTGGAGCCTACTTCCGGGACCTGTGGAACATTCTGGACTTCATTGTGGTCAGTGGGGCCCTGGTGGCCTTTGCCTTCTCGAGCTTCATGGGAGGATCCAAAGGGAAAGACATCAACACCATCAAGTCCCTGAGGGTTCTACGTGTCCTGAGGCCCCTGAAGACTATCAAACGGCTGCCTAAGCTTAAGGCTGTGTTTGACTGTGTGGTGAACTCTCTGAAGAATGTCCTGAACATCCTGATTGTTTACATGCTCTTCATGTTCATATTTGCCGTCATTGCAGTACAGCTCTTCAAAGGGAAGTTTTTCTACTGCACTGATGAATCCAAGGAGCTGGAGAGGGACTGCAGGGGTCAGTATTTGGATTATGAGAAGGAGGAAGTGGAAGCACAGCCAAGGCAATGGAAGAAATATGACTTCCACTACGACAATGTGCTCTGGGCCCTGCTGACACTGTTCACAGTGTCCACGGGAGAAGGGTGGCCTATGGTGCTGAAACACTCTGTGGATGCCACCTATGAGGAGCAGGGACCAAGCCCTGGGTTTCGCATGGAGCTCTCCATCTTCTATGTGGTCTACTTTGTGGTCTTCCCCTTTTTCTTTGTCAACATCTTCGTGGCCTTGATCATCATCACCTTCCAGGAGCAGGGGGACAAGGTGATGTCTGAATGCAGCCTGGAGAAGAATGAGAGGGCTTGCATTGACTTCGCCATCAGCGCCAAGCCCCTGACACGATACATGCCTCAAAATAGGCAGTCATTCCAGTATAAGACGTGGACGTTCGTAGTCTCTCCGCCCTTCGAGTACTTCATCATGGCCATGATAGCTCTCAACACTGTGGTGCTGATGATGAAGTTCTACGATGCACCCTACGAGTATGAGCTGATGCTGAAATGCCTGAATATTGTGTTCACATCCATGTTCTCCATGGAATGCGTGCTGAAGATCATCGCCTTTGGGGTGCTGAACTATTTCAGAGATGCCTGGAATGTCTTTGACTTTGTCACTGTGTTGGGAAGTATTACTGATATTTTAGTAACAGAGATTGCGAACAACTTCATCAACCTTAGCTTCCTGCGCCTCTTCAGAGCTGCACGGCTCATTAAACTGCTCCGCCAGGGCTACACCATCCGCATCCTGCTGTGGACTTTTGTCCAGTCTTTCAAGGCGCTGCCCTACGTGTGCCTCCTCATCGCCATGCTGTTCTTCATCTACGCCATCATCGGCATGCAGGTGTTTGGCAACATTGCCTTGGACGATGACACCAGCATCAATCGGCACAACAACTTCCGGACGTTCTTGCAAGCCTTGATGCTCCTGTTCAGGAGTGCCACAGGGGAGGCCTGGCACGAGATCATGCTGTCTTGCCTGAGCAACCGGGCCTGTGACCCAAATGCCAATGCCAGCGAGTGCGGGAGTGACTTTGCCTACTTTTACTTCGTATCCTTTATCTTCCTTTGCTCCTTTCTGATGCTGAACCTCTTTGTGGCTGTCATCATGGATAACTTTGAGTACCTCACGCGGGACTCTTCCATCCTGGGGCCGCACCACCTAGACGAGTTCATCCGGGTCTGGGCCGAGTACGACCCGGCTGCATGTGGGCGCATCAGTTACAATGACATGTTTGAGATGCTGAAACACATGTCCCCACCTCTGGGGCTGGGGAAGAAATGCCCTGCTCGAGTTGCATACAAGCGCCTGGTTCGCATGAACATGCCTATCTCCAGTGAGGATATGACAGTGCACTTCACCTCCACACTGATGGCCCTCATTCGGACAGCATTGGAGATCAAGCTGGCCCCAGCTGGGACAAAGCAGCACCAGTGTGATGCGGAGCTGAGGAAGGAGATTTCCTCAGTGTGGGCCAATCTGCCCCAGAAGACTCTAGACTTACTGGTACCACCCCACAAGCCTGATGAGATGACAGTGGGGAAAGTCTATGCAGCCCTGATGATATTCGACTTTTACAAACAGAACAAAACCACCCGAGACCAGATTCACCAAGCTCCAGGAGGCCTGTCCCAGATGGGCCCCGTGTCCCTGTTCCATCCTCTGAAGGGCACCCTGGAGCAGACACAGCCGGCTATGCTCCGAGGAGCTCGAGCTTTCCTTCGGCAGAAGAGTTCCACCTCCCTTAGCAACGGTGGGGCCATACAAACCCAAGAGAGTGGCATCAAGGAGTCGGTGTCCTGGGGCACACAGAGGACCCAGGAAGCACTCTACGAGGCCAGGGCGCCACTGGAACGTGGCCATTCTGCAGAGATCCCTGTGGGGCAGCGGGGAACACTGGCTGTGGATGTCCAGATGCAGAGCGCCGCCCTGAGGGACCCGGATGGAGAGCCCCAACCTGGGCTGCAGAGTCAGGGCCGAGCCGCCTCTATGCCCCGCCTGGCCGCAGAAACACAGCCTGCTCCTGACGCCAGTCCCATGAAGCGCTCCATCTCCACGCTGGCCCAGCGCCCCCATGGGGCCCACCTCTGCAGTGCTGCCCTGGACCGCCTGGCCCCCGGCCAGGTGCCACATCACCATCATCACCGCTGCCACCGTCGCAGGGACAAGAAGCAGAAGTCCTTGGAAAAGGGGCCCAGCCTGTCTGCCGACACAGATGGTGCACCCAGCAGCACCCCAGGACCTGGCCTGGCCCCAGGCGAGGGGCCCGCAGGCTGCCGGCACGAGCGCAGGCAAGGACGTGGCCGGTCCCAGGAGCGGAGGCAGCCCTCGTCCTCGTCCTCCGAGAAGCAGCGCTTCTACTCCTGTGACCGCTTTGGGGGCCGGGAGCCCCCACAGCCCAAGCCCTCTGTCAGCAGCCACCCCACGTCTCCGACAGCTGGGCTGGAGCCGGCGCCTGCCCCCCAGGGTGGTGGCTCCGTCACTGGCAGCCCCTTGCTGTCCACATCTGGTGCTAGCACCCCAGGCCGAGGTGGGCGGAGGCAGCTCCCGCAGACCCCCCTGACGCCCCGCCCCAGCATCACCTACAAGACGGCCAACTCCTCGCCTGTCCACTTTGGCGGGGCTCAGAGCAGCCTCTCAGCCTTCTCCCCTGGCCGGCTAAGCCGAGGACTTTCTGAACACAATGCCCTGCTCCAGAGAGACCCCCTGAGCCAACCCCTGGCCCCTAGCTCTCGCATCGGCTCCGACCCTTACCTGGGGCAGCGCCTGGACAGCGAGGCCTCTGCCCACGCCTTGCCTGAGGACACGCTCACCTTTGAGGAGGCCATGGCCAGCAACTCAGGCCGCTCCTCCAGGACTTCCTATGTGTCCTCCCTGACCTCCCAGTCCCACCCCCTGCGCCGCGTGCCCAATGGCTACCACTGCACTCTGGGACTCAGCACCGGCGGCCGGGCTCGGCACAGTTACCACCACCCTGACCAAGACCACTGGTGCTAG

Related Sequences

XP_004848749.1 Protein

Cacna1b PREDICTED: voltage-dependent N-type calcium channel subunit alpha-1B isoform X1 [Heterocephalus glaber]

Length: 2318 aa      View alignments
>XP_004848749.1
MVRFGDELGGRYGGASGGERARGGGAGGAGGPGPGGLQPGQRVLYKQSIAQRARTMALYNPIPVKQNCFTVNRSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKFHKACFPNSTDADPVGDFPCGKDAPARLCEGDTECREYWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENRRAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDVLKRAATKKSRNDLIHAEEGEDRFADLCAVGSPFTRTSLKSGKTESSSYFRRKEKMFRFFIRRMVKAQSFYWVVLCVVALNTLCVAMVHYNQPQRLTTALYFAEFVFLGLFLTEMSLKMYGLGPRSYFRSSFNCFDFGVIVGSIFEVVWAAIKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFKDETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVSKGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEMEEAANQKLALQKAKEVAEVSPMSAANISIAARQQNSARARSVWEQRASQLRLQNLRASCEALYSEMDPEERLRYATSRHLRPDMKTHLDRPLVVEHSRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADRMDGAEPGARGEHARPRHSRSKEATGGQEARGERSRGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGRRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPCDLEARGVMGVDPVHALPSTCLQKVEEQPEDADNQRNVTRMGSQPSDPSTAVHAPVTLTDPAGETTAVPSGNVDLESQAEGKKEVEADDMLRSGPRPIVPYSSMFCLSPTNLLRRFCHSIVTMRYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSSFMGGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELERDCRGQYLDYEKEEVEAQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYEEQGPSPGFRMELSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISAKPLTRYMPQNRQSFQYKTWTFVVSPPFEYFIMAMIALNTVVLMMKFYDAPYEYELMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIANNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDDTSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNRACDPNANASECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMPISSEDMTVHFTSTLMALIRTALEIKLAPAGTKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKTTRDQIHQAPGGLSQMGPVSLFHPLKGTLEQTQPAMLRGARAFLRQKSSTSLSNGGAIQTQESGIKESVSWGTQRTQEALYEARAPLERGHSAEIPVGQRGTLAVDVQMQSAALRDPDGEPQPGLQSQGRAASMPRLAAETQPAPDASPMKRSISTLAQRPHGAHLCSAALDRLAPGQVPHHHHHRCHRRRDKKQKSLEKGPSLSADTDGAPSSTPGPGLAPGEGPAGCRHERRQGRGRSQERRQPSSSSSEKQRFYSCDRFGGREPPQPKPSVSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTSGASTPGRGGRRQLPQTPLTPRPSITYKTANSSPVHFGGAQSSLSAFSPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPYLGQRLDSEASAHALPEDTLTFEEAMASNSGRSSRTSYVSSLTSQSHPLRRVPNGYHCTLGLSTGGRARHSYHHPDQDHWC