Sequence details NCBI ID: XM_004848669.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh6
Gene Name cadherin 6, type 2, K-cadherin (fetal kidney), transcript variant X2
Entrez Gene ID 101696372

Database interlinks

Part of NW_004624759.1 (Scaffold)

For more information consult the page for NW_004624759.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH6 ENSCPOG00000009127 (Guinea pig)

Gene Details

cadherin 6, type 2, K-cadherin (fetal kidney)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008196, Guinea pig)

Protein Percentage 95.69%
CDS Percentage 94.42%
Ka/Ks Ratio 0.133 (Ka = 0.0215, Ks = 0.162)

CDH6 ENSG00000113361 (Human)

Gene Details

cadherin 6, type 2, K-cadherin (fetal kidney)

External Links

Gene Match (Ensembl Protein ID: ENSP00000265071, Human)

Protein Percentage 96.58%
CDS Percentage 92.83%
Ka/Ks Ratio 0.06436 (Ka = 0.017, Ks = 0.2642)

Cdh6 ENSMUSG00000039385 (Mouse)

Gene Details

cadherin 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037113, Mouse)

Protein Percentage 95.19%
CDS Percentage 89.92%
Ka/Ks Ratio 0.05569 (Ka = 0.0235, Ks = 0.4215)

CDH6 ENSRNOG00000013535 (Rat)

Gene Details

cadherin-6 precursor

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018246, Rat)

Protein Percentage 93.4%
CDS Percentage 88.96%
Ka/Ks Ratio 0.0772 (Ka = 0.034, Ks = 0.4398)

Genome Location

Sequence Coding sequence

Length: 2373 bp    Location: 23305346..23160553   Strand: -
Raw sequence   
>XM_004848669.1
ATGAGAACTTACCGGTATTTCTTGCTGCTCTTTTGGGTGGGTCAGCCCTACCCAACTTTCTCAGCTCCATTATCTAAGAGGACTAGTGGTTTCCCGGCAAAGAAAAGGGCCCTGGAGCTCTCAGGAAACAGCAAAAATGAGCTGAACCGTTCAAAAAGGAGTTGGATGTGGAACCAATTCTTTCTCCTGGAGGAATACACGGGATCGGATTATCAGTATGTGGGCAAGTTACATTCAGACCAGGATAGAGGAGATGGATCACTTAAATATATCCTTTCAGGAGATGGAGCAGGAGATCTCTTCATTATCAATGAAAACACAGGCGACATACAAGCCACTAAGAGGTTGGACAGGGAGAAAAAACCTGTTTACATCCTTCGAGCTCAAGCTGTTAACAGAAGGACAGGGAAACCTATAGAGCCCGAGTCTGAATTCGTCATCAAGATCCATGACATCAACGACAATGAACCAATATTCACTGAGGAGGTTTATACAGCTACTGTTCCTGAAATGTCTGATGTCGGCACATTTGTTGTCCAAGTCACTGCAACTGATGCTGATGATCCAACGTACGGGAACAGTGCTAAAGTTGTCTATAGTATCCTACAGGGACAACCCTATTTTTCAGTTGAATCAGAAACAGGTATCATCAAGACAGCTTTGCACAACATGGATCGAGAAAACAGAGAGCAGTACCAAGTGGTGATTCAAGCCAAGGACATGGGCGGCCAGATGGGGGGACTATCGGGGACCACCACAGTGAATATCACGCTGACCGACGTCAATGACAACCCTCCCCGATTCCCTCAGAGTACATATCAATTTAAAACTGCTGAATCTTCTCCACCGGGTACACCAATTGGCAGGATCAAAGCCAGCGATGCTGATGTAGGAGAAAATGCCAAAATTGTGTACAGTATCACAGATGGTGAGGGGCTGGATATGTTTGATGTCATCACTGACCAGGAAACCCAGGAAGGGATTATAACTGTCAAAAAGCTCTTGGACTTTGAAAAGAAGAAAGTATACACCCTCAAAGTAGAAGCCTCCAATCCCCGCGTAGAAGCCCAATTTCAATACCTGGGTCCATTCAAAGATTCAGCCATGGTGAGAATCGTAGTGGAGGATGTCGATGAGCCGCCTGTCTTCAGCAAAGTAGCCTACATCCTACAGATAAGAGAAGATGCTCAGATAAACACAACCATAGGCTCGGTCACAGCTCAAGATCCAGATGCCCCCAGGAATCCCATCAAGTACTCTGTAGACCGACACACAGATATGGACAGAATATTCAACATTGATTCTGGAAATGGTTCGATTTTTACATCGAAACTTCTTGACCGGGAAACACTGCTGTGGCACAACATTACAGTGATAGCGACAGAGATTAATAATCCAAAGCAAAGTAGCCGAGTACCTCTATATATTAAAGTTCTAGATGTCAATGACAACGCCCCAGAATTTGCTGAGTTCTATGAAACCTTTGTCTGTGAAAAAGCAAAGGCAGATCAGTTAATCCAGACCCTACGAGCTGTTGACAAGGACGACCCTTACAGTGGACACCAATTTTCCTTCTCTTTGTCCCCTGAAGCAACCAGTAGCTCAAACTTTACCATTCATGACAACAGAGACAACACTGCGGGAATCTTAACTCGGAAAAATGGCTACAATAGACATGAGATGAGCACCTATCTCCTGCCTGTGGTCATTTCAGACAATGACTACCCAGTTCAAAGCAGCACTGGGACAGTGACTGTCCGGGTCTGTGCATGTGACCACCACGGGAACATGCAGTCCTGCCATGCGGAGGCCCTCATCCACCCCACGGGACTGAGCACAGGGGCTCTGGTGGCCATCCTCCTGTGCATCGTGATCCTACTAGTGACAGTGGTGCTATTTGCAGCTCTGAGGCGGCAGCGGAAGAAAGAGCCCTTGATCATTTCCAAAGAGGACATCAGAGATAACATTGTCAGTTACAACGATGAAGGTGGTGGAGAAGAAGACACCCAGGCCTTTGATATCGGCACCCTGAGGAACCCTGAAGCCATAGAGGACAACAAATTACGAAGGGACATTGTGCCTGAAGCTCTTTTTCTACCCCGTCGGACTCCAACAGCTCGAGACAACACCGATGTAAGAGATTTCATTAACCAAAGGTTAAAGGAAAATGACACGGACCCCACAGCCCCGCCGTATGACTCCTTGGCCACCTATGCCTACGAAGGCACCGGTTCGGTGGCCGATTCCCTGAGCTCTCTGGAGTCTGTGACCACGGATGGAGATCAAGACTATGATTACCTTAGTGACTGGGGCCCTCGATTCAAAAAGCTGGCAGATATGTATGGAGGGGTGGACAGCGACAAAGACTCCTAA

Related Sequences

XP_004848726.1 Protein

Cdh6 PREDICTED: cadherin-6 isoform X2 [Heterocephalus glaber]

Length: 790 aa      View alignments
>XP_004848726.1
MRTYRYFLLLFWVGQPYPTFSAPLSKRTSGFPAKKRALELSGNSKNELNRSKRSWMWNQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREKKPVYILRAQAVNRRTGKPIEPESEFVIKIHDINDNEPIFTEEVYTATVPEMSDVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALHNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQSTYQFKTAESSPPGTPIGRIKASDADVGENAKIVYSITDGEGLDMFDVITDQETQEGIITVKKLLDFEKKKVYTLKVEASNPRVEAQFQYLGPFKDSAMVRIVVEDVDEPPVFSKVAYILQIREDAQINTTIGSVTAQDPDAPRNPIKYSVDRHTDMDRIFNIDSGNGSIFTSKLLDRETLLWHNITVIATEINNPKQSSRVPLYIKVLDVNDNAPEFAEFYETFVCEKAKADQLIQTLRAVDKDDPYSGHQFSFSLSPEATSSSNFTIHDNRDNTAGILTRKNGYNRHEMSTYLLPVVISDNDYPVQSSTGTVTVRVCACDHHGNMQSCHAEALIHPTGLSTGALVAILLCIVILLVTVVLFAALRRQRKKEPLIISKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPEAIEDNKLRRDIVPEALFLPRRTPTARDNTDVRDFINQRLKENDTDPTAPPYDSLATYAYEGTGSVADSLSSLESVTTDGDQDYDYLSDWGPRFKKLADMYGGVDSDKDS