Details from NCBI annotation

Gene Symbol Hmgcs1
Gene Name 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble), transcript variant X1
Entrez Gene ID 101712604

Database interlinks

Part of NW_004624759.1 (Scaffold)

For more information consult the page for NW_004624759.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HMGCS1 ENSCPOG00000007115 (Guinea pig)

Gene Details

3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006414, Guinea pig)

Protein Percentage 97.14%
CDS Percentage 94.47%
Ka/Ks Ratio 0.07141 (Ka = 0.0143, Ks = 0.1999)

HMGCS1 ENSG00000112972 (Human)

Gene Details

3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)

External Links

Gene Match (Ensembl Protein ID: ENSP00000322706, Human)

Protein Percentage 94.81%
CDS Percentage 92.82%
Ka/Ks Ratio 0.09252 (Ka = 0.0242, Ks = 0.2617)

Hmgcs1 ENSMUSG00000093930 (Mouse)

Gene Details

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000136944, Mouse)

Protein Percentage 94.81%
CDS Percentage 89.1%
Ka/Ks Ratio 0.06979 (Ka = 0.0306, Ks = 0.4379)

Hmgcs1 ENSRNOG00000016552 (Rat)

Gene Details

3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) (Hmgcs1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023554, Rat)

Protein Percentage 95.0%
CDS Percentage 89.1%
Ka/Ks Ratio 0.06298 (Ka = 0.0284, Ks = 0.4509)

Genome Location

Sequence Coding sequence

Length: 1665 bp    Location: 11831047..11847111   Strand: +
>XM_004848560.1
ATGTATAGATTTCTTAACTGCAGAAACTTACTGTGCCGGAAGGAGGAAGCAGTGACGGACCTGGAGACTGCATTTCCCTGTCCTTCCTACAGCTCTTTCACCATGCCTGGGTCACTTCCTTTGAATGCAGAAGCTTGTTGGCCAAAAGATGTGGGAATTGTTGCCCTTGAGATCTATTTTCCTTCTCAATATGTTGATCAAACGCAGTTGGAAAAATATGATGGTGTTGATGCTGGCAAGTATACCATTGGCTTGGGCCAGGCAAAGATGGGCTTCTGCACAGATCGAGAGGACATCAACTCTCTTTGCCTGACTGTGGTTCAGAATCTGATGGAAAGACATAGTCTTTCCTATGACTGCATTGGGCGGCTCGAGGTTGGAACAGAGACAATCATCGACAAATCAAAGTCTGTGAAGAGTAATTTGATGCAGCTGTTTGAGGAGTCTGGGAATACAGACATAGAAGGAATAGATACGACTAACGCATGCTATGGAGGCACGGCTGCTGTCTTCAATGCTGTTAACTGGATTGAGTCTAGCTCTTGGGATGGACGGTATGCTCTGGTAGTTGCAGGAGATATTGCTATATATGCCACAGGAAATGCCAGACCTACTGGTGGAGCTGGAGCTGTGGCTCTGCTAATTGGACCAAATGCTCCTTTAATTTTTGACCGAGGGCTTCGTGGAACACATATGCAGCATGCCTATGACTTTTACAAGCCTGATATGCTCTCTGAATATCCTATAGTAGATGGAAAACTCTCTATACAGTGCTACCTCAGTGCATTAGATCGCTGCTATTCTGTCTACCGTAAAAAGATCCGTGCCCAGTGGCAGAAAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTTCACTCACCATATTGTAAACTGGTTCAGAAATCTCTAGCTCGGATGATGCTGAATGATTTCCTTAATGACCAGAACAGAGATAAAAATACTATCTATAGTGGACTGGAAGCCTTTGGGGATGTTAAATTAGAAGATACTTACTTTGACAGAGATGTAGAAAAGGCATTTATGAAGGCCAGTTCTGAACTCTTTAATCAGAAAACAAAGGCTTCTTTGCTTGTATCAAATCAAAATGGAAATATGTATACATCTTCAGTATATGGTTCCCTTGCTTCTGTTTTAGCACAGTACTCACCTCAGCAATTGGCAGGAAAGAGGATTGGAGTATTCTCTTATGGTTCTGGTTTGGCTGCCACCCTGTATTCTCTTAGAGTCACGCAAGATGCCACACCAGGGTCTGGTCTTGATAAAATAACAGCAGGTTTATGTGATCTTAAATCACGGCTTGACTCAAGAACTTGTGTAGCACCTGATGTCTTTGCTGAAAGCATGAAGCTCAGAGAGGACACTCATCACTTGGCCAACTATATTCCCCAGAGTTCAGTAGATTCACTCTTTGAAGGGACATGGTACCTAGTTAGAGTGGATGAAAAGCACAGAAGAACTTATGCTCGACGCCCCTCTCCAAATGATGACACTTTGGATGAGGGAGTAGGACTTGTTCATTCAAACACAGCAACTGAGCATATCCCAAGCCCTGCTAAGAAAGTGCCAAGACTTCCCACAACAGGAACAGAACCTGAAGCAGCTGTCATTAGTAATGGGGAACATTAA

Related Sequences

XP_004848617.1 Protein

Hmgcs1 PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1 [Heterocephalus glaber]

Length: 554 aa      View alignments
>XP_004848617.1
MYRFLNCRNLLCRKEEAVTDLETAFPCPSYSSFTMPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQTQLEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCLTVVQNLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAIYATGNARPTGGAGAVALLIGPNAPLIFDRGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIRAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMMLNDFLNDQNRDKNTIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLRVTQDATPGSGLDKITAGLCDLKSRLDSRTCVAPDVFAESMKLREDTHHLANYIPQSSVDSLFEGTWYLVRVDEKHRRTYARRPSPNDDTLDEGVGLVHSNTATEHIPSPAKKVPRLPTTGTEPEAAVISNGEH